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IMGVR_UViG_3300049907_000138-3300049907-Ga0496601_002067_3_119

Arc-Vir

IMGVR_UViG_3300049907_000138-3300049907-Ga0496601_002067_3_119

Identity

Kingdom:
archaea

Quality

92.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-33
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3bgtA01 2.40.400.10 Mainly Beta › Beta Barrel › Acetoacetate decarboxylase-like › Acetoacetate decarboxylase-like 0.70 52.0 3.12e-01 81.8% 88.7%
6pwkA02 3.20.20.450 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain 0.69 41.0 2.44e-01 90.9% 7.8%
2xssA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.64 49.0 3.31e-01 100.0% 22.4%
7wrgB01 3.40.850.10 Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain 0.62 45.0 2.76e-01 100.0% 22.0%
1wscA01 3.30.700.20 Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › Hypothetical protein ph0010; domain 1 0.62 50.0 3.39e-01 100.0% 37.6%
5fl3A01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.61 48.0 3.58e-01 100.0% 92.0%
3es1A01 2.20.70.150 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.61 43.0 4.20e-01 75.8% 75.7%
4ywzB00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.60 47.0 3.22e-01 100.0% 61.0%
1bd3A00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.60 48.0 3.02e-01 97.0% 17.0%
3hrdC02 3.30.390.50 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain 0.60 41.0 2.91e-01 72.7% 21.2%
1xttB00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.56 40.0 2.63e-01 97.0% 18.8%
2qrdE01 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.56 39.0 2.72e-01 100.0% 20.6%
3ogzA01 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.54 41.0 2.38e-01 100.0% 25.2%
1to6A02 3.90.1510.10 Alpha Beta › Alpha-Beta Complex › Glycerate kinase, domain 2 › Glycerate kinase, domain 2 0.53 41.0 2.56e-01 97.0% 62.4%
4gs5A01 3.40.50.12780 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain 0.51 37.0 2.29e-01 100.0% 12.3%
1a3wA01 3.40.1380.20 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › Pyruvate kinase, C-terminal domain 0.51 37.0 2.58e-01 97.0% 25.8%
3hrzB01 2.20.130.20 Mainly Beta › Single Sheet › S-adenosyl-L-methionine-dependent methyltransferases › 0.51 37.0 3.15e-01 100.0% 44.7%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3588093 2484.1.1.144 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DEDD_Tnp_IS110 0.70 50.0 3.31e-01 72.7% 17.8%
1641233 4019.1.1.3 ↗ alpha complex topology › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase 0.65 51.0 3.37e-01 100.0% 19.9%
3244094 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.64 44.0 4.53e-01 72.7% 88.0%
5062579 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.63 51.0 4.04e-01 100.0% 42.7%
2037203 223.3.1.3 ↗ a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase 0.63 50.0 4.56e-01 100.0% 64.7%
1179535 223.3.1.3 ↗ a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase 0.63 50.0 4.18e-01 100.0% 48.5%
4873577 223.3.1.3 ↗ a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase 0.63 49.0 3.24e-01 100.0% 19.6%
3580983 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 51.0 3.43e-01 97.0% 36.0%
3652038 2484.1.1.67 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.58 41.0 3.17e-01 90.9% 30.6%
3455742 284.2.1.2 ↗ a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain › DUF8223 0.57 39.0 3.58e-01 100.0% 56.9%
3588825 2004.1.1.552 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T4SS-DNA_transf, TraG-D_C 0.56 38.0 2.16e-01 75.8% 5.3%
3769782 263.1.1.4 ↗ a+b three layers › SRF-like › SRF-like › SRF-like › PRAS_NT 0.53 39.0 3.42e-01 100.0% 66.2%
4997180 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.52 35.0 2.60e-01 84.8% 31.5%
3302022 2484.1.1.67 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.52 39.0 2.99e-01 100.0% 52.0%
5030935 2008.1.1.39 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Endonuc-BglII 0.51 38.0 2.51e-01 97.0% 32.2%
2048220 223.1.1.96 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › dCache_2 0.51 35.0 2.60e-01 100.0% 77.6%