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IMGVR_UViG_3300050509_000421-3300050509-nmdc-mga0qj67_860_c1_17723_18766

Arc-Vir

Identity

Accession:: IMGVR_UViG_3300050509_000421-3300050509-nmdc-mga0qj67_860_c1_17723_18766 ↗
Kingdom:: archaea

Quality

93.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-122

PDB

Domain cluster: representative

CATH (19)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
6mzbB03	1.10.1300.10	Mainly Alpha › Orthogonal Bundle › Catalytic domain of cyclic nucleotide phosphodiesterase 4b2b › 3'5'-cyclic nucleotide phosphodiesterase, catalytic domain	0.67	48.0	3.37e-01	73.3%	59.3%
4a8eA01	1.10.150.130	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain	0.64	46.0	5.20e-01	76.7%	97.7%
3sqiA01	1.10.150.540	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 ›	0.64	51.0	5.44e-01	84.5%	98.0%
1xo0A01	1.10.150.130	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain	0.58	45.0	4.61e-01	82.8%	97.3%
3r2cA00	1.10.940.10	Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like	0.57	40.0	3.81e-01	71.6%	94.9%
1dceA01	1.25.40.120	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Protein prenylyltransferase	0.56	44.0	3.17e-01	82.8%	34.4%
2vm6A00	1.10.437.10	Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like	0.55	47.0	4.46e-01	95.7%	89.6%
6wh0A01	1.10.437.10	Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like	0.55	48.0	4.44e-01	98.3%	93.4%
4f0uA00	1.10.490.20	Mainly Alpha › Orthogonal Bundle › Globin-like › Phycocyanins	0.54	39.0	3.50e-01	74.1%	70.0%
1sqgA01	1.10.940.10	Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like	0.54	38.0	3.62e-01	74.1%	80.9%
4w66B00	1.20.1050.130	Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 ›	0.54	39.0	3.22e-01	76.7%	80.0%
2kbwA01	1.10.437.10	Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like	0.53	47.0	4.35e-01	99.1%	89.5%
3ztaA00	1.10.490.130	Mainly Alpha › Orthogonal Bundle › Globin-like ›	0.53	43.0	4.08e-01	87.1%	87.8%
2v0cA04	1.10.730.10	Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1	0.53	39.0	3.52e-01	96.6%	56.0%
2imsA00	1.10.437.10	Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like	0.53	47.0	4.20e-01	98.3%	90.2%
1owlA02	1.25.40.80	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.52	42.0	4.11e-01	100.0%	80.5%
7ccmB01	1.10.437.10	Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like	0.52	46.0	4.34e-01	99.1%	93.0%
2co9A00	1.10.30.10	Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain	0.52	28.0	2.98e-01	79.3%	58.8%
1quuA01	1.20.58.60	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.51	41.0	4.06e-01	86.2%	86.5%

ECOD (15)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4978391	186.1.1.1 ↗	alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1	0.66	51.0	5.39e-01	81.0%	100.0%
4473841	186.1.1.1 ↗	alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1	0.65	49.0	5.18e-01	80.2%	95.2%
3689532	3924.1.1.1 ↗	alpha complex topology › Sterol uptake control protein 2 › Sterol uptake control protein 2 › Sterol uptake control protein 2 › Fungal_trans_2	0.61	49.0	4.08e-01	85.3%	71.5%
3693930	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.60	48.0	4.34e-01	84.5%	84.5%
3709846	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.58	46.0	4.18e-01	85.3%	69.4%
4033699	621.1.1.10 ↗	alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › DUF4118	0.56	43.0	4.22e-01	81.0%	86.4%
3279566	106.1.1.11 ↗	alpha arrays › Globin-like › Globin-like › Globin-like › RsbRD_N	0.55	40.0	3.73e-01	76.7%	82.0%
3582684	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.55	42.0	3.41e-01	81.9%	70.7%
3383623	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.55	44.0	3.55e-01	90.5%	45.0%
5005962	131.1.1.0 ↗	alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like	0.54	41.0	3.26e-01	81.0%	95.8%
5035598	3930.1.1.3 ↗	alpha bundles › Helical bundle insertion in helicase domains › Helical bundle in Hef helicase › Helical bundle in Hef helicase › RNA_helicase_helical	0.53	40.0	3.97e-01	81.9%	74.4%
3347270	3843.1.1.0 ↗	alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K	0.52	36.0	3.73e-01	87.9%	76.2%
5067508	3930.1.1.3 ↗	alpha bundles › Helical bundle insertion in helicase domains › Helical bundle in Hef helicase › Helical bundle in Hef helicase › RNA_helicase_helical	0.52	40.0	3.85e-01	81.9%	74.8%
3980736	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.52	39.0	3.17e-01	81.9%	77.1%
3638682	106.1.1.0 ↗	alpha arrays › Globin-like › Globin-like › Globin-like	0.50	39.0	3.90e-01	86.2%	86.4%

D2 medium residues 125-152_279-347

PDB

Domain cluster: representative

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3h4cA01	1.10.472.10	Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like	0.54	35.0	3.59e-01	89.7%	66.7%
3bc8A01	1.10.10.2160	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A ›	0.50	34.0	3.90e-01	84.5%	97.1%

D3 medium residues 153-278

PDB

Domain cluster: representative

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1uw1A00	3.10.450.210	Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, ›	0.54	30.0	3.81e-01	86.5%	100.0%
5cw7B00	3.30.2310.20	Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like	0.53	26.0	3.00e-01	74.6%	61.7%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4966682	101.1.8.1 ↗	alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase	0.79	52.0	5.45e-01	96.0%	73.0%
5058465	101.1.8.1 ↗	alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase	0.75	48.0	4.84e-01	96.0%	64.8%
3693595	244.1.1.0 ↗	a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C	0.51	39.0	3.49e-01	81.7%	97.2%