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IMGVR_UViG_3300050509_000421-3300050509-nmdc-mga0qj67_860_c1_2751_3002

Arc-Vir

Identity

Accession:: IMGVR_UViG_3300050509_000421-3300050509-nmdc-mga0qj67_860_c1_2751_3002 ↗
Kingdom:: archaea

Quality

68.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-64

PDB

Domain cluster: representative

CATH (12)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
8be0A01	3.40.91.90	Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › Influenza RNA-dependent RNA polymerase subunit PA, endonuclease domain	0.66	46.0	3.35e-01	75.0%	58.1%
3pqaB01	3.40.605.10	Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1	0.65	47.0	3.11e-01	78.1%	47.8%
2l4eA00	1.10.8.10	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain	0.62	37.0	3.91e-01	76.6%	66.7%
1x4qA01	1.20.1390.10	Mainly Alpha › Up-down Bundle › PWI domain › PWI domain	0.61	46.0	4.43e-01	79.7%	74.6%
6xzqA01	3.40.91.90	Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › Influenza RNA-dependent RNA polymerase subunit PA, endonuclease domain	0.60	44.0	3.36e-01	81.2%	40.1%
1zv1A00	1.10.8.10	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain	0.59	39.0	4.05e-01	79.7%	74.6%
1owfA00	4.10.520.10	Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins	0.58	39.0	3.46e-01	70.3%	87.5%
6lmjB00	4.10.520.10	Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins	0.57	40.0	3.48e-01	73.4%	95.9%
2ejsA00	1.10.8.10	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain	0.56	34.0	3.54e-01	76.6%	65.5%
2om6A02	1.10.150.400	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 ›	0.56	42.0	4.04e-01	87.5%	88.6%
4pt4B00	4.10.520.10	Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins	0.54	41.0	3.59e-01	81.2%	100.0%
1bgcA00	1.20.1250.10	Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; ›	0.51	34.0	2.63e-01	70.3%	43.0%

ECOD (9)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4272320	101.17.1.1 ↗	alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding	0.57	40.0	4.00e-01	71.9%	100.0%
4386119	102.1.1.42 ↗	alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › RNAseD_HRDC_C	0.56	43.0	4.19e-01	82.8%	82.9%
3267835	284.1.3.1 ↗	a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › SNF5	0.56	40.0	3.47e-01	78.1%	74.3%
3741408	284.1.3.1 ↗	a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › SNF5	0.55	41.0	3.25e-01	79.7%	60.7%
3725790	103.1.1.0 ↗	alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain	0.55	39.0	3.66e-01	78.1%	78.8%
4966151	101.1.2.140 ↗	alpha arrays › HTH › HTH › winged helix domain › HTH_AsnC-type	0.54	37.0	3.56e-01	71.9%	68.0%
3862022	148.1.3.0 ↗	alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain	0.53	38.0	3.42e-01	76.6%	61.1%
2337274	4993.1.1.2 ↗	extended segments › Glu-tRNAGln amidotransferase C subunit › Glu-tRNAGln amidotransferase C subunit › Glu-tRNAGln amidotransferase C subunit › AtzG-like	0.53	36.0	3.60e-01	71.9%	81.8%
4543174	4156.1.1.4 ↗	alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › HA2_C	0.52	43.0	3.26e-01	95.3%	96.5%