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IMGVR_UViG_3300050509_000421-3300050509-nmdc-mga0qj67_860_c1_6749_7204

Arc-Vir

IMGVR_UViG_3300050509_000421-3300050509-nmdc-mga0qj67_860_c1_6749_7204

Quality

93.4 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 41-150
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00770.25 best Peptidase_C5 33.6 4.50e-08 97.3% 57.0%
CATH (38)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4ekfA00 3.40.395.10 Alpha Beta › 3-Layer(aba) Sandwich › Adenoviral Proteinase; Chain › Adenoviral Proteinase; Chain A 0.79 74.0 6.06e-01 100.0% 58.9%
6upsA01 3.40.395.10 Alpha Beta › 3-Layer(aba) Sandwich › Adenoviral Proteinase; Chain › Adenoviral Proteinase; Chain A 0.78 74.0 6.47e-01 100.0% 80.0%
1xt9A00 3.40.395.10 Alpha Beta › 3-Layer(aba) Sandwich › Adenoviral Proteinase; Chain › Adenoviral Proteinase; Chain A 0.74 68.0 5.49e-01 100.0% 70.7%
1th0B00 3.40.395.10 Alpha Beta › 3-Layer(aba) Sandwich › Adenoviral Proteinase; Chain › Adenoviral Proteinase; Chain A 0.69 64.0 5.00e-01 100.0% 65.0%
3egyX00 3.30.572.10 Alpha Beta › 2-Layer Sandwich › Thymidylate Synthase; Chain A › Thymidylate synthase/dCMP hydroxymethylase domain 0.62 43.0 3.40e-01 71.8% 42.3%
4alzA03 3.30.70.1770 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 34.0 4.28e-01 97.3% 96.9%
2b78A02 3.30.750.80 Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › RNA methyltransferase domain (HRMD) like 0.59 43.0 4.48e-01 93.6% 81.4%
3bioA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.59 40.0 4.03e-01 90.9% 68.4%
4l4qA02 3.30.300.340 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › S-adenosylmethionine synthetase, N-terminal domain 0.58 46.0 4.39e-01 84.5% 91.3%
1wuoA00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.58 46.0 3.69e-01 85.5% 66.2%
6t5kC00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.57 49.0 3.86e-01 91.8% 70.1%
3pg4A00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.57 45.0 3.56e-01 84.5% 66.5%
1a7tA00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.56 46.0 3.67e-01 88.2% 67.4%
1m2xA00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.56 44.0 3.54e-01 84.5% 66.7%
1ko2A00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.56 45.0 3.60e-01 88.2% 69.1%
4ad9A01 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.55 44.0 3.65e-01 86.4% 74.5%
5e5bA01 3.40.350.10 Alpha Beta › 3-Layer(aba) Sandwich › Creatine Amidinohydrolase; Chain A, domain 1 › Creatinase/prolidase N-terminal domain 0.55 44.0 3.82e-01 85.5% 87.1%
1dxkA00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.54 45.0 3.60e-01 90.0% 70.1%
2fhxA00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.54 45.0 3.49e-01 90.0% 71.8%
2i00A02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.54 41.0 3.66e-01 80.0% 86.2%
1p9eA00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.52 40.0 3.03e-01 83.6% 68.7%
6a8mA01 3.40.350.10 Alpha Beta › 3-Layer(aba) Sandwich › Creatine Amidinohydrolase; Chain A, domain 1 › Creatinase/prolidase N-terminal domain 0.52 41.0 3.65e-01 87.3% 87.1%
1k07A00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.52 41.0 3.13e-01 84.5% 58.4%
1zbrA00 3.75.10.10 Alpha Beta › 5-stranded Propeller › L-arginine/glycine Amidinotransferase; Chain A › L-arginine/glycine Amidinotransferase; Chain A 0.52 46.0 3.33e-01 100.0% 91.2%
1vkpB00 3.75.10.10 Alpha Beta › 5-stranded Propeller › L-arginine/glycine Amidinotransferase; Chain A › L-arginine/glycine Amidinotransferase; Chain A 0.52 46.0 3.25e-01 100.0% 65.3%
6u10A00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.52 41.0 3.14e-01 85.5% 59.5%
3n7zA02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.52 41.0 3.69e-01 85.5% 86.6%
2c6zA00 3.75.10.10 Alpha Beta › 5-stranded Propeller › L-arginine/glycine Amidinotransferase; Chain A › L-arginine/glycine Amidinotransferase; Chain A 0.52 43.0 3.27e-01 91.8% 71.8%
4awyB00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.52 40.0 3.10e-01 84.5% 59.6%
6b10A00 3.75.10.10 Alpha Beta › 5-stranded Propeller › L-arginine/glycine Amidinotransferase; Chain A › L-arginine/glycine Amidinotransferase; Chain A 0.52 45.0 3.33e-01 100.0% 62.8%
6dq2A00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.52 40.0 3.13e-01 85.5% 58.9%
5h8yD02 3.30.413.10 Alpha Beta › 2-Layer Sandwich › Sulfite Reductase Hemoprotein; domain 1 › Sulfite Reductase Hemoprotein, domain 1 0.51 41.0 3.41e-01 87.3% 91.1%
1o2dA01 3.40.50.1970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 45.0 3.90e-01 97.3% 63.6%
1d0nA02 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.51 40.0 4.09e-01 84.5% 84.5%
6n36A00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.51 41.0 3.12e-01 86.4% 60.4%
2bx2L02 3.40.1260.20 Alpha Beta › 3-Layer(aba) Sandwich › Hypothetical Protein Ychn; Chain: A, › Ribonuclease E, catalytic domain 0.51 38.0 3.86e-01 80.0% 84.5%
2h1iA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.50 43.0 3.54e-01 96.4% 86.8%
3aj3A00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.50 37.0 2.82e-01 78.2% 96.7%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
153044 219.1.1.5 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C5 0.79 74.0 6.06e-01 100.0% 58.9%
4236698 219.1.1.20 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Acetyltransf_14 0.79 73.0 5.41e-01 100.0% 57.5%
2419913 219.1.1.66 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › ElaD-SseL-like_C 0.78 73.0 6.14e-01 100.0% 71.7%
3738382 219.1.1.16 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C48 0.77 71.0 5.43e-01 100.0% 64.2%
3994259 219.1.1.16 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C48 0.76 69.0 5.37e-01 100.0% 59.6%
2323988 219.1.1.20 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Acetyltransf_14 0.74 69.0 4.82e-01 100.0% 50.6%
3410176 219.1.1.16 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C48 0.74 68.0 5.40e-01 100.0% 71.2%
3793128 219.1.1.16 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C48 0.73 67.0 5.58e-01 100.0% 68.6%
3627887 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.73 67.0 5.62e-01 100.0% 70.6%
4942543 327.11.1.5 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) › KH_7 0.61 36.0 4.45e-01 72.7% 100.0%
4990760 327.11.1.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) 0.58 35.0 4.18e-01 73.6% 92.9%
4863910 327.5.1.0 a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins 0.57 40.0 4.55e-01 91.8% 100.0%
3514938 213.1.1.6 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › ODC_AZ 0.57 48.0 4.65e-01 89.1% 92.5%
5043364 327.11.1.5 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) › KH_7 0.57 32.0 4.00e-01 95.5% 100.0%
5000739 327.11.1.5 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) › KH_7 0.56 34.0 4.09e-01 99.1% 100.0%
3164938 247.1.1.1 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B 0.56 42.0 3.21e-01 80.0% 51.1%
4207583 247.1.1.1 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B 0.56 45.0 3.38e-01 86.4% 50.5%
4880620 247.1.1.1 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B 0.56 45.0 3.60e-01 88.2% 68.8%
2582514 247.1.1.1 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B 0.56 45.0 3.58e-01 88.2% 67.4%
3504010 247.1.1.0 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase 0.56 45.0 3.28e-01 86.4% 51.1%
3785896 327.7.1.0 a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like 0.56 36.0 4.11e-01 89.1% 90.0%
1266295 247.1.1.0 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase 0.55 44.0 3.31e-01 86.4% 53.3%
4971719 247.1.1.1 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B 0.55 42.0 3.44e-01 82.7% 71.8%
3980816 3261.1.1.0 a+b two layers › amino-terminal domain of OmpATb › amino-terminal domain of OmpATb › amino-terminal domain of OmpATb 0.55 35.0 4.08e-01 80.0% 94.7%
3526787 213.1.1.6 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › ODC_AZ 0.55 48.0 4.62e-01 98.2% 93.1%
None 0.55 43.0 3.59e-01 85.5% 75.0%
3590054 2003.1.5.74 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltrans_SAM 0.54 46.0 3.31e-01 92.7% 36.0%
5049115 247.1.1.1 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B 0.54 44.0 3.15e-01 88.2% 56.4%
4003055 247.1.1.1 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B 0.54 43.0 3.38e-01 86.4% 58.8%
5015049 2003.1.5.74 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltrans_SAM 0.54 46.0 3.31e-01 93.6% 36.6%
None 0.54 43.0 3.47e-01 86.4% 67.3%
None 0.54 46.0 3.30e-01 92.7% 36.8%
3968539 247.1.1.17 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › ODP 0.54 43.0 3.30e-01 86.4% 62.3%
74344 292.1.1.1 a+b two layers › RIP/Polo-box domain › Ribosome inactivating proteins (RIP) › Ribosome inactivating proteins (RIP) › RIP 0.54 46.0 3.60e-01 98.2% 60.5%
5009573 247.1.1.17 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › ODP 0.54 42.0 3.29e-01 85.5% 61.8%
None 0.53 43.0 3.20e-01 86.4% 49.5%
4927029 327.11.1.5 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) › KH_7 0.53 33.0 3.87e-01 72.7% 95.7%
3419267 7512.1.1.0 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase 0.53 38.0 3.52e-01 94.5% 55.3%
3559665 213.1.1.6 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › ODC_AZ 0.53 48.0 4.58e-01 100.0% 93.1%
5014817 247.1.1.17 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › ODP 0.53 43.0 3.40e-01 90.0% 64.9%
3828765 7579.1.1.36 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_3 0.53 45.0 3.22e-01 94.5% 70.6%
4505079 2007.1.7.1 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Rossmann-like domain in dehydroquinate synthase-like enzymes › Fe-ADH 0.53 46.0 3.88e-01 96.4% 60.0%
3415235 224.1.1.0 a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like 0.52 42.0 2.71e-01 87.3% 96.2%
4585891 213.1.1.6 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › ODC_AZ 0.52 46.0 3.61e-01 96.4% 93.5%
3896647 232.1.1.0 a+b duplicates or obligate multimers › Pentein › Pentein › Pentein 0.52 47.0 3.50e-01 100.0% 68.8%
3602886 2003.1.5.82 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_31 0.52 45.0 3.23e-01 93.6% 36.2%
4965041 247.1.1.1 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B 0.52 43.0 3.24e-01 90.0% 49.1%
3643938 224.1.1.2 a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Gelsolin 0.52 41.0 4.05e-01 93.6% 79.2%
1888440 327.5.1.2 a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › AMP-binding_C 0.52 43.0 4.41e-01 100.0% 94.5%
5013541 247.1.1.1 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B 0.51 43.0 3.43e-01 91.8% 68.4%
3570981 224.1.1.2 a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Gelsolin 0.51 39.0 3.99e-01 80.9% 84.8%
4994386 247.1.1.1 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B 0.51 43.0 3.20e-01 93.6% 52.8%
3773397 224.1.1.2 a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Gelsolin 0.51 39.0 3.96e-01 80.9% 84.5%
4997310 224.1.1.2 a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Gelsolin 0.51 39.0 4.18e-01 83.6% 95.7%
5033939 327.5.1.10 a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › PF27533 0.51 41.0 3.60e-01 90.9% 58.2%
5078646 213.1.1.53 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_6 0.51 42.0 3.49e-01 90.0% 67.2%
5071704 247.1.1.1 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B 0.50 42.0 3.35e-01 90.0% 70.0%
3643936 224.1.1.2 a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Gelsolin 0.50 39.0 3.70e-01 83.6% 73.3%
3833645 224.1.1.2 a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Gelsolin 0.50 39.0 2.93e-01 84.5% 33.7%