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IMGVR_UViG_3300050581_000073-3300050581-Ga0531113_001473_22905_23114

Arc-Vir

IMGVR_UViG_3300050581_000073-3300050581-Ga0531113_001473_22905_23114

Identity

Kingdom:
archaea

Quality

80.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-56
PDB
Domain cluster: representative
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7ahhC02 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.67 45.0 3.64e-01 75.9% 36.2%
3i8nB00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.63 42.0 3.22e-01 75.9% 29.4%
3lhhA01 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.61 41.0 3.38e-01 81.5% 35.2%
4r5qA00 3.90.320.10 Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › 0.60 49.0 3.42e-01 100.0% 58.1%
6b9sB02 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.58 40.0 3.67e-01 75.9% 54.8%
3v7dD01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.56 48.0 3.98e-01 100.0% 69.0%
2ihyA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 47.0 3.10e-01 100.0% 25.0%
3vtxB00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.55 46.0 3.27e-01 100.0% 30.6%
4ebjA02 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.54 39.0 3.11e-01 83.3% 100.0%
6qu3A02 3.40.50.450 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.54 43.0 3.09e-01 98.1% 34.9%
3c0wA02 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.54 41.0 3.54e-01 94.4% 99.0%
2vq2A00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.54 44.0 3.02e-01 100.0% 26.8%
3lmmA03 3.30.565.60 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › 0.53 40.0 2.89e-01 83.3% 62.6%
1p5dX02 3.40.120.10 Alpha Beta › 3-Layer(aba) Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 › Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 0.53 38.0 3.56e-01 83.3% 66.7%
3qyaA00 3.40.50.12780 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain 0.53 44.0 2.65e-01 100.0% 16.6%
1zfjA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.53 42.0 2.57e-01 100.0% 39.7%
3hz7A00 3.30.110.40 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › TusA-like domain 0.52 40.0 3.72e-01 88.9% 68.5%
5djsA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.52 42.0 3.25e-01 100.0% 38.5%
3pjvD01 3.30.110.200 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › 0.51 37.0 3.46e-01 85.2% 64.1%
4uqxA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.51 41.0 3.67e-01 100.0% 59.6%
1tqgA00 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.51 40.0 3.31e-01 88.9% 69.5%
ECOD (31)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3238619 109.21.1.2 ↗ alpha superhelices › Repetitive alpha hairpins › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nup96 0.70 61.0 3.50e-01 100.0% 12.0%
3189083 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.69 52.0 4.72e-01 83.3% 81.3%
4340179 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.66 44.0 3.49e-01 81.5% 33.0%
3757966 109.4.1.1469 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Death_MADD 0.63 54.0 3.44e-01 100.0% 34.4%
3901620 109.7.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Cytochrome c oxidase subunit E › Cytochrome c oxidase subunit E 0.58 39.0 3.69e-01 72.2% 60.0%
4566218 286.1.1.1 ↗ a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase 0.58 49.0 3.86e-01 100.0% 87.2%
3723708 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.58 44.0 3.13e-01 88.9% 35.1%
3345562 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.57 48.0 3.08e-01 100.0% 19.3%
None — 0.57 45.0 3.50e-01 92.6% 83.1%
3451346 109.4.1.5 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1 0.56 45.0 3.44e-01 100.0% 36.4%
4158314 2004.1.1.5 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.55 47.0 3.09e-01 98.1% 26.0%
3689133 2008.1.1.79 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Pet127 0.55 42.0 2.59e-01 90.7% 46.7%
3634774 109.4.1.192 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8 0.55 44.0 3.31e-01 100.0% 34.0%
1182376 109.4.1.1702 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1, ANAPC3, TPR_6, TPR_8, TPR_11 0.55 46.0 3.27e-01 100.0% 30.6%
3716634 109.4.1.1357 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_2, TPR_16 0.54 45.0 2.80e-01 100.0% 15.5%
5038384 109.4.1.202 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_16 0.53 44.0 3.42e-01 100.0% 43.6%
5022727 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 41.0 3.19e-01 94.4% 63.3%
3266343 101.1.2.512 ↗ alpha arrays › HTH › HTH › winged helix domain › PF25877 0.53 37.0 3.69e-01 79.6% 93.3%
4959388 109.4.1.195 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_11 0.52 43.0 2.90e-01 100.0% 22.4%
3593516 109.4.1.1394 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1, TPR_8, TPR_12 0.52 44.0 3.44e-01 100.0% 45.4%
3276313 109.4.1.5 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1 0.52 42.0 3.24e-01 100.0% 38.0%
3260749 109.4.1.2241 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1, TPR_2, TPR_8, TPR_19 0.52 43.0 3.39e-01 100.0% 43.8%
3948391 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.52 43.0 3.54e-01 100.0% 53.6%
3462898 109.4.1.5 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1 0.52 43.0 3.07e-01 100.0% 30.0%
5044936 159.1.2.0 ↗ alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related 0.52 36.0 3.10e-01 75.9% 74.7%
3893337 11.1.1.968 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF30304 0.52 43.0 3.03e-01 100.0% 47.5%
3168689 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.51 44.0 3.03e-01 100.0% 51.9%
3670444 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.51 42.0 3.30e-01 100.0% 43.7%
3607551 109.4.1.3309 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1, TPR_2, PF30484 0.51 41.0 3.28e-01 100.0% 45.4%
3592584 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.51 40.0 3.26e-01 100.0% 42.4%
5003129 101.1.2.78 ↗ alpha arrays › HTH › HTH › winged helix domain › AlkZ-like 0.50 36.0 3.44e-01 79.6% 81.5%