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IMGVR_UViG_3300051397_000034-3300051397-Ga0531430_02953_136_345

Arc-Vir

IMGVR_UViG_3300051397_000034-3300051397-Ga0531430_02953_136_345

Identity

Kingdom:
archaea

Quality

84.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 7-69
PDB
Domain cluster: representative
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3goxA03 3.40.1800.10 Alpha Beta › 3-Layer(aba) Sandwich › His-Me finger endonuclease fold › His-Me finger endonucleases 0.62 43.0 4.02e-01 74.6% 67.9%
3ml4C01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 41.0 3.44e-01 71.4% 85.2%
4e1pA00 3.30.60.230 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › Lsr2, dimerisation domain 0.60 43.0 4.55e-01 77.8% 90.9%
1tdzA02 1.10.8.50 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.55 39.0 3.05e-01 74.6% 48.5%
3aeiA00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.53 38.0 3.28e-01 98.4% 50.0%
4uw2B03 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.52 36.0 2.86e-01 71.4% 60.7%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3767360 377.1.1.16 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › zf-FCS 0.79 57.0 5.07e-01 74.6% 72.9%
5081423 378.1.1.3 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › Endonuclease_7 0.58 42.0 4.09e-01 81.0% 86.5%
4597621 150.1.2.3 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Heme oxygenase/Ribonucleotide reductase › Phenol_Hydrox 0.56 45.0 2.73e-01 93.7% 31.9%
3828931 376.1.2.2 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 0.56 39.0 3.87e-01 73.0% 75.4%
3288143 2487.1.1.8 ↗ a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › RraA-like 0.55 41.0 2.83e-01 84.1% 52.9%
4952760 2487.1.1.8 ↗ a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › RraA-like 0.54 41.0 3.02e-01 85.7% 62.6%
3549240 5.1.4.253 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, WD40_Gbeta 0.54 40.0 2.57e-01 85.7% 58.4%
374819 2487.1.1.8 ↗ a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › RraA-like 0.53 40.0 2.89e-01 87.3% 59.2%
3224303 101.1.2.113 ↗ alpha arrays › HTH › HTH › winged helix domain › RNase_H2-Ydr279 0.52 37.0 2.99e-01 74.6% 54.2%
4974686 2487.1.1.8 ↗ a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › RraA-like 0.52 40.0 2.91e-01 87.3% 61.3%
3329213 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.52 41.0 3.67e-01 88.9% 70.5%
3986582 327.16.1.3 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system › Secretin_N 0.51 36.0 2.85e-01 73.0% 94.6%