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IMGVR_UViG_638275408_000001-638275408-638316665
Arc-VirIMGVR_UViG_638275408_000001-638275408-638316665
Identity
- Kingdom:
- archaea
Quality
65.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 24-76
Domain cluster:
representative
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1eyvB00 | 1.10.940.10 | Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like | 0.80 | 67.0 | 4.84e-01 | 94.3% | 35.3% |
| 1q5nA03 | 1.10.40.30 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) | 0.77 | 55.0 | 4.65e-01 | 84.9% | 48.1% |
| 2h09A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.77 | 55.0 | 5.04e-01 | 77.4% | 57.7% |
| 2go7A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.74 | 51.0 | 4.69e-01 | 71.7% | 56.7% |
| 2rhcA00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.72 | 59.0 | 3.72e-01 | 88.7% | 97.3% |
| 4d7rA01 | 1.10.220.20 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › | 0.71 | 53.0 | 4.61e-01 | 83.0% | 52.4% |
| 2x4hA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.71 | 49.0 | 3.75e-01 | 77.4% | 30.2% |
| 3d1lA02 | 1.10.1040.20 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › ProC-like, C-terminal domain | 0.70 | 55.0 | 4.51e-01 | 100.0% | 46.5% |
| 5b1aH00 | 1.10.10.140 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Cytochrome c oxidase, subunit VIb | 0.70 | 44.0 | 3.84e-01 | 98.1% | 44.3% |
| 6o9aA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.68 | 47.0 | 3.37e-01 | 71.7% | 25.2% |
| 6xzqA01 | 3.40.91.90 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › Influenza RNA-dependent RNA polymerase subunit PA, endonuclease domain | 0.66 | 50.0 | 3.60e-01 | 84.9% | 93.8% |
| 3dkqA02 | 4.10.860.20 | Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain | 0.65 | 48.0 | 5.15e-01 | 96.2% | 89.4% |
| 4h15A00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.62 | 51.0 | 3.30e-01 | 94.3% | 92.3% |
| 5dukB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.62 | 41.0 | 3.76e-01 | 100.0% | 53.7% |
| 7d1tA01 | 1.20.85.10 | Mainly Alpha › Up-down Bundle › Photosynthetic Reaction Center, subunit M; domain 1 › Photosystem II protein D1-like | 0.60 | 53.0 | 3.65e-01 | 100.0% | 42.3% |
| 7ymiD01 | 1.20.85.10 | Mainly Alpha › Up-down Bundle › Photosynthetic Reaction Center, subunit M; domain 1 › Photosystem II protein D1-like | 0.60 | 53.0 | 3.65e-01 | 100.0% | 29.4% |
| 1tfeA02 | 1.10.286.20 | Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › | 0.58 | 41.0 | 4.30e-01 | 81.1% | 91.1% |
| 1kq4A00 | 3.30.1360.170 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.57 | 53.0 | 3.46e-01 | 100.0% | 34.0% |
| 1hr5A00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.55 | 45.0 | 4.72e-01 | 90.6% | 95.8% |
| 2vxzA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 38.0 | 3.55e-01 | 100.0% | 59.1% |
| 1vhxB00 | 3.30.420.140 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain | 0.54 | 39.0 | 2.92e-01 | 79.2% | 43.5% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4166913 | 1156.1.1.1 ↗ | alpha complex topology › EcoR124I HsdR C-terminal domain › EcoR124I HsdR C-terminal domain › EcoR124I HsdR C-terminal domain › EcoR124_C | 0.86 | 74.0 | 5.17e-01 | 90.6% | 91.7% |
| 5001070 | 1076.1.1.1 ↗ | alpha bundles › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Rce1-like | 0.79 | 67.0 | 4.11e-01 | 90.6% | 51.6% |
| 5079692 | 2006.1.4.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like | 0.74 | 54.0 | 4.22e-01 | 81.1% | 36.5% |
| 3969664 | 101.1.1.18 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_8 | 0.71 | 50.0 | 4.57e-01 | 73.6% | 63.2% |
| 5015137 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.68 | 56.0 | 4.26e-01 | 98.1% | 40.9% |
| 3278996 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.68 | 56.0 | 4.66e-01 | 100.0% | 51.0% |
| 3491348 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.66 | 48.0 | 4.17e-01 | 79.2% | 49.4% |
| 3539738 | 10.12.1.1 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding | 0.65 | 53.0 | 3.42e-01 | 98.1% | 20.4% |
| 4994798 | 3646.1.1.0 ↗ | alpha complex topology › T-component of energy-coupling factor (ECF) transporters › T-component of energy-coupling factor (ECF) transporters › T-component of energy-coupling factor (ECF) transporters | 0.65 | 54.0 | 3.64e-01 | 96.2% | 24.5% |
| 3297509 | 148.1.3.318 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › PF28551 | 0.65 | 49.0 | 4.59e-01 | 92.5% | 65.7% |
| 4028650 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.64 | 53.0 | 5.07e-01 | 100.0% | 78.3% |
| 3943304 | 101.1.6.16 ↗ | alpha arrays › HTH › HTH › TrpR › HTH_22 | 0.62 | 47.0 | 4.03e-01 | 83.0% | 80.0% |
| 1383934 | 104.1.1.2 ↗ | alpha duplicates or obligate multimers › TFIIA, alpha-helical domain › TFIIA, alpha-helical domain › TFIIA, alpha-helical domain › TFIIA | 0.60 | 52.0 | 5.02e-01 | 100.0% | 100.0% |
| 4020233 | 101.42.1.0 ↗ | alpha arrays › HTH › CC2 domain in SUN proteins › CC2 domain in SUN proteins | 0.58 | 45.0 | 4.52e-01 | 96.2% | 85.5% |
| 3352389 | 101.1.10.58 ↗ | alpha arrays › HTH › HTH › Cyclin-like › PF30926 | 0.52 | 37.0 | 3.67e-01 | 81.1% | 69.1% |