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IMGVR_UViG_638275408_000001-638275408-638316676
Arc-VirIMGVR_UViG_638275408_000001-638275408-638316676
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 8-113
Domain cluster:
representative
CATH (31)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3lnnA02 | 2.40.30.170 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain | 0.70 | 57.0 | 6.04e-01 | 99.1% | 100.0% |
| 4kktA02 | 2.40.30.170 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain | 0.69 | 60.0 | 6.04e-01 | 100.0% | 94.3% |
| 3ne5C02 | 2.40.30.170 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain | 0.69 | 57.0 | 5.87e-01 | 100.0% | 95.1% |
| 2gk6A02 | 2.40.30.230 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.69 | 51.0 | 5.62e-01 | 99.1% | 100.0% |
| 1vf7F01 | 2.40.30.170 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain | 0.65 | 57.0 | 5.79e-01 | 96.2% | 100.0% |
| 1zyoA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.63 | 44.0 | 4.91e-01 | 88.7% | 91.6% |
| 4ga6A01 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.61 | 45.0 | 4.96e-01 | 93.4% | 98.8% |
| 4rdlA02 | 2.40.30.120 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses | 0.60 | 53.0 | 5.33e-01 | 98.1% | 99.1% |
| 3h7lA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.58 | 43.0 | 4.51e-01 | 96.2% | 88.2% |
| 1f6fB02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 41.0 | 4.30e-01 | 100.0% | 83.5% |
| 1vq8B02 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.57 | 51.0 | 4.68e-01 | 99.1% | 83.2% |
| 3atsA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.56 | 42.0 | 4.06e-01 | 80.2% | 70.7% |
| 5oj2B02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 41.0 | 4.31e-01 | 92.5% | 86.5% |
| 3x17A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 44.0 | 4.52e-01 | 98.1% | 91.2% |
| 5wl1A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 40.0 | 4.11e-01 | 94.3% | 79.2% |
| 4igbB02 | 2.60.40.740 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.55 | 42.0 | 3.86e-01 | 100.0% | 60.8% |
| 4q0yA00 | 2.60.40.4400 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.55 | 35.0 | 3.30e-01 | 74.5% | 51.1% |
| 2ok5A02 | 2.40.10.120 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.54 | 46.0 | 3.66e-01 | 94.3% | 61.2% |
| 3uxfA02 | 2.60.40.740 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.54 | 47.0 | 4.10e-01 | 100.0% | 62.7% |
| 2gefA01 | 2.30.42.30 | Mainly Beta › Roll › Pdz3 Domain › | 0.54 | 41.0 | 4.05e-01 | 94.3% | 75.9% |
| 2dchX02 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.54 | 44.0 | 4.35e-01 | 89.6% | 85.6% |
| 6toaE01 | 2.40.10.270 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Bacteriophage SPP1 head-tail adaptor protein | 0.53 | 37.0 | 3.85e-01 | 79.2% | 77.6% |
| 3ko2A00 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.53 | 44.0 | 3.90e-01 | 92.5% | 84.5% |
| 1wzlA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 41.0 | 4.01e-01 | 99.1% | 75.2% |
| 1axiB02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 39.0 | 4.03e-01 | 96.2% | 86.1% |
| 4z1xA02 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.52 | 42.0 | 3.83e-01 | 92.5% | 65.7% |
| 4k08A00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.52 | 37.0 | 3.34e-01 | 74.5% | 66.7% |
| 6xw5A01 | 2.40.510.10 | Mainly Beta › Beta Barrel › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Positive stranded ssRNA viruses | 0.51 | 43.0 | 3.70e-01 | 94.3% | 98.8% |
| 2ab5A02 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.51 | 42.0 | 3.90e-01 | 90.6% | 79.1% |
| 2vqeE01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.50 | 29.0 | 3.54e-01 | 99.1% | 93.8% |
| 1dleB02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.50 | 38.0 | 3.48e-01 | 81.1% | 68.3% |
ECOD (46)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3942790 | 4312.1.1.0 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like | 0.78 | 31.0 | 3.92e-01 | 76.4% | 60.0% |
| 3837954 | 1.1.7.87 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25954 | 0.73 | 61.0 | 6.36e-01 | 100.0% | 98.9% |
| 4299010 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.72 | 57.0 | 6.03e-01 | 100.0% | 93.7% |
| 3970513 | 1.1.7.87 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25954 | 0.71 | 54.0 | 5.87e-01 | 97.2% | 100.0% |
| 3971461 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.71 | 56.0 | 5.98e-01 | 98.1% | 98.9% |
| 4565791 | 1.1.7.87 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25954 | 0.70 | 56.0 | 5.96e-01 | 99.1% | 100.0% |
| 3968971 | 1.1.7.87 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25954 | 0.70 | 55.0 | 5.94e-01 | 98.1% | 98.9% |
| 3929255 | 1.1.7.10 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Flavokinase | 0.70 | 58.0 | 5.25e-01 | 100.0% | 66.2% |
| 4608778 | 1.1.7.107 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25965 | 0.69 | 56.0 | 5.43e-01 | 100.0% | 78.3% |
| 3973637 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.69 | 58.0 | 6.02e-01 | 100.0% | 97.0% |
| 3944005 | 1.1.7.87 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25954 | 0.69 | 55.0 | 5.11e-01 | 100.0% | 68.4% |
| 3386803 | 1.1.7.79 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Beta-barrel_RND | 0.66 | 57.0 | 5.86e-01 | 100.0% | 99.0% |
| 4072524 | 1.1.7.88 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25963 | 0.66 | 53.0 | 5.31e-01 | 100.0% | 84.5% |
| 4864011 | 1.1.7.41 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › UPF1_1B_dom | 0.65 | 53.0 | 5.41e-01 | 100.0% | 90.5% |
| 4400928 | 1.1.7.10 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Flavokinase | 0.65 | 53.0 | 5.10e-01 | 100.0% | 76.0% |
| 3945834 | 1.1.7.79 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Beta-barrel_RND | 0.63 | 54.0 | 5.52e-01 | 99.1% | 99.0% |
| 3626966 | 1.1.7.90 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ZNFX1 | 0.63 | 51.0 | 5.12e-01 | 98.1% | 87.3% |
| 4550769 | 1.1.7.14 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › CTP-dep_RFKase | 0.63 | 56.0 | 5.15e-01 | 100.0% | 97.9% |
| 3250857 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.62 | 45.0 | 4.82e-01 | 96.2% | 88.9% |
| 3227251 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.62 | 53.0 | 5.17e-01 | 99.1% | 85.2% |
| 3224730 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.62 | 56.0 | 5.53e-01 | 99.1% | 99.1% |
| 5000724 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.62 | 37.0 | 3.89e-01 | 98.1% | 65.3% |
| 3552831 | 1.1.7.41 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › UPF1_1B_dom | 0.61 | 55.0 | 5.54e-01 | 100.0% | 99.0% |
| 3741921 | 1.1.7.81 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › SEN1_barrel | 0.61 | 51.0 | 5.17e-01 | 100.0% | 94.3% |
| 3560235 | 2004.1.1.184 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_11 | 0.61 | 55.0 | 3.52e-01 | 100.0% | 21.8% |
| 5029482 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.60 | 34.0 | 3.94e-01 | 91.5% | 75.0% |
| 1159602 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.60 | 48.0 | 4.77e-01 | 93.4% | 81.2% |
| 3224728 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.60 | 52.0 | 5.09e-01 | 100.0% | 90.4% |
| 5013672 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.59 | 33.0 | 4.08e-01 | 89.6% | 89.2% |
| 3594805 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.58 | 47.0 | 4.85e-01 | 100.0% | 94.0% |
| 3949363 | 12.1.1.99 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › T6SS_TssF | 0.58 | 51.0 | 4.80e-01 | 100.0% | 79.2% |
| 3832688 | 4081.1.1.7 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Ribophorin_I | 0.58 | 45.0 | 3.71e-01 | 100.0% | 43.9% |
| 2390911 | 11.1.1.48 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CelD_N | 0.58 | 42.0 | 4.45e-01 | 94.3% | 89.1% |
| 3915626 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.57 | 43.0 | 4.52e-01 | 98.1% | 89.5% |
| 3299946 | 1.1.7.81 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › SEN1_barrel | 0.57 | 50.0 | 4.94e-01 | 100.0% | 93.9% |
| 3931991 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.57 | 36.0 | 3.53e-01 | 100.0% | 58.3% |
| 3520465 | 212.1.1.17 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › EFG_IV | 0.57 | 42.0 | 3.99e-01 | 78.3% | 72.0% |
| 4952909 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.56 | 42.0 | 4.24e-01 | 84.9% | 80.0% |
| 4971399 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.55 | 47.0 | 4.65e-01 | 91.5% | 90.0% |
| 4137219 | 2.1.1.6 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB | 0.55 | 34.0 | 3.53e-01 | 98.1% | 65.0% |
| 4961941 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.54 | 38.0 | 2.65e-01 | 72.6% | 44.3% |
| 4988103 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.53 | 40.0 | 4.22e-01 | 82.1% | 90.5% |
| 4247994 | 1.1.13.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_GPD | 0.53 | 41.0 | 4.18e-01 | 82.1% | 93.0% |
| 3418365 | 4081.1.1.7 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Ribophorin_I | 0.53 | 46.0 | 3.18e-01 | 100.0% | 92.0% |
| 3553997 | 11.1.1.179 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 | 0.53 | 42.0 | 4.17e-01 | 96.2% | 82.7% |
| 3609230 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.52 | 37.0 | 3.43e-01 | 91.5% | 55.9% |