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IMGVR_UViG_638275408_000001-638275408-638316679

Arc-Vir

IMGVR_UViG_638275408_000001-638275408-638316679

Identity

Kingdom:
archaea

Quality

82.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-101
PDB
Domain cluster: representative
CATH (37)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4on1A01 2.40.128.470 Mainly Beta › Beta Barrel › Lipocalin › 0.82 63.0 5.56e-01 80.6% 61.9%
3p24A01 2.40.128.470 Mainly Beta › Beta Barrel › Lipocalin › 0.81 62.0 5.25e-01 79.6% 65.4%
2eabB01 2.70.98.50 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › putative glycoside hydrolase family protein from bacillus halodurans 0.73 55.0 4.03e-01 78.6% 74.2%
1k8kD01 3.30.1460.20 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.69 50.0 4.31e-01 75.5% 68.9%
2f7lA04 3.30.310.50 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain 0.68 41.0 4.40e-01 81.6% 69.4%
1kafA00 3.90.1150.20 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Transcription regulator MotA, C-terminal domain 0.67 52.0 5.04e-01 81.6% 75.0%
2x7gA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.67 46.0 4.88e-01 71.4% 84.1%
4c57B00 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.65 53.0 3.69e-01 87.8% 43.8%
3s2cJ01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.63 44.0 3.91e-01 72.4% 98.6%
3qszA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.63 45.0 3.71e-01 74.5% 90.4%
1qw9A01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.62 44.0 4.00e-01 73.5% 98.5%
5ncsA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.62 43.0 3.77e-01 70.4% 74.8%
4rs6A01 3.30.1120.30 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain 0.61 46.0 4.28e-01 96.9% 64.4%
2ogqA01 3.30.1120.30 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain 0.61 47.0 4.27e-01 95.9% 61.9%
4lowA00 3.30.1360.20 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Transcriptional coactivator/pterin dehydratase 0.61 46.0 4.91e-01 78.6% 100.0%
3i1aA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.61 42.0 4.18e-01 71.4% 78.6%
2kx2A00 3.30.780.30 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › 0.61 45.0 4.60e-01 79.6% 80.2%
4g6tA00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.60 46.0 4.21e-01 80.6% 68.8%
3kxyJ00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.60 46.0 4.22e-01 81.6% 73.6%
2qb7B02 3.10.310.20 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › DHHA2 domain 0.58 48.0 4.29e-01 90.8% 78.6%
4avaA02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.57 49.0 4.01e-01 93.9% 98.9%
1jqpA01 2.40.128.80 Mainly Beta › Beta Barrel › Lipocalin › Cathepsin C, exclusion domain 0.57 40.0 3.82e-01 82.7% 62.5%
4dw8A02 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.56 40.0 3.92e-01 72.4% 84.0%
4i0wA00 3.30.70.2980 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 39.0 3.99e-01 80.6% 76.1%
3mswA00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.56 42.0 3.70e-01 78.6% 68.3%
1nf2A02 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.55 39.0 3.80e-01 72.4% 84.0%
6fopA01 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.54 48.0 3.66e-01 99.0% 77.0%
4yhxA01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.52 42.0 3.73e-01 87.8% 87.9%
3hvwA00 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.52 35.0 3.07e-01 70.4% 86.2%
1af5A00 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.52 42.0 3.91e-01 88.8% 76.2%
2a1vA00 3.90.1150.30 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.52 43.0 3.92e-01 93.9% 85.5%
2zvfA02 3.10.310.40 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › 0.52 44.0 4.34e-01 100.0% 88.7%
4r03A00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.52 46.0 4.44e-01 100.0% 86.2%
8ornD01 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.51 45.0 3.76e-01 100.0% 81.8%
2eyqA07 3.90.1150.50 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Transcription-repair-coupling factor, D7 domain 0.50 44.0 3.93e-01 100.0% 72.8%
5a72A00 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.50 41.0 3.54e-01 88.8% 61.8%
3lduA01 3.30.2130.30 Alpha Beta › 2-Layer Sandwich › VC0802-like › 0.50 38.0 3.19e-01 81.6% 94.4%
ECOD (61)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1309460 3338.1.1.1 a+b two layers › Fragilysin-3 prodomain-like › Fragilysin-3 prodomain › Fragilysin-3 prodomain › fragilysinNterm 0.82 63.0 5.50e-01 80.6% 60.1%
4875201 3338.1.1.1 a+b two layers › Fragilysin-3 prodomain-like › Fragilysin-3 prodomain › Fragilysin-3 prodomain › fragilysinNterm 0.82 63.0 5.57e-01 80.6% 67.4%
5025492 12.3.1.0 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.74 56.0 4.16e-01 78.6% 80.9%
5023789 242.1.1.7 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.73 46.0 4.96e-01 75.5% 74.1%
3776086 306.10.1.5 a+b two layers › Glucose permease domain IIB-like › H1 domain of KCTD12 › H1 domain of KCTD12 › PF31088 0.68 47.0 4.25e-01 71.4% 81.5%
3365684 306.6.1.0 a+b two layers › Glucose permease domain IIB-like › PH0987 N-terminal domain-like › PH0987 N-terminal domain-like 0.67 48.0 4.82e-01 73.5% 86.0%
3938970 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.67 44.0 4.83e-01 80.6% 82.5%
4937024 242.1.1.7 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.67 45.0 4.75e-01 70.4% 80.0%
3211086 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.66 40.0 3.79e-01 77.6% 49.2%
4435772 5104.1.1.0 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases 0.66 52.0 4.79e-01 82.7% 78.9%
4998275 5104.1.1.0 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases 0.65 50.0 4.73e-01 82.7% 77.5%
4991854 5104.1.1.0 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases 0.65 47.0 4.85e-01 76.5% 89.5%
4932677 5104.1.1.1 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 0.64 50.0 4.68e-01 82.7% 79.2%
4957627 5104.1.1.1 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 0.64 49.0 4.70e-01 82.7% 80.9%
4982212 5104.1.1.0 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases 0.64 49.0 4.63e-01 82.7% 73.3%
4971696 5104.1.1.0 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases 0.64 50.0 4.48e-01 82.7% 69.2%
4629064 241.1.1.0 a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone 0.63 49.0 4.15e-01 83.7% 70.3%
2709787 4059.1.1.1 a+b complex topology › Serpins › Serpins › Serpins › Serpin 0.63 43.0 2.88e-01 70.4% 42.0%
5000284 5104.1.1.0 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases 0.62 51.0 4.84e-01 87.8% 82.6%
3369895 304.12.1.0 a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 0.62 51.0 5.17e-01 86.7% 94.7%
3185519 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.62 44.0 2.76e-01 73.5% 96.9%
3586949 2006.1.1.37 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › S6PP+Hydrolase_3 0.62 44.0 3.14e-01 72.4% 34.6%
4990838 5104.1.1.1 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 0.61 47.0 4.57e-01 82.7% 77.3%
4994703 4955.1.1.0 a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit 0.61 47.0 5.02e-01 80.6% 94.1%
4956243 5104.1.1.0 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases 0.61 46.0 4.42e-01 82.7% 75.4%
143130 306.3.1.3 a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like › DUF5750 0.61 45.0 4.60e-01 79.6% 80.2%
5023543 242.1.1.7 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.60 42.0 4.20e-01 75.5% 70.0%
3258965 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 42.0 4.44e-01 79.6% 80.0%
2597170 310.2.1.1 a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › RRF 0.60 42.0 3.40e-01 72.4% 81.1%
3384789 304.8.1.45 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant 0.60 48.0 4.67e-01 86.7% 93.6%
4184923 3016.1.1.10 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › GDC-P 0.60 46.0 5.06e-01 87.8% 100.0%
4244689 207.11.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Urease accessory protein ureH › Urease accessory protein ureH › UreD 0.59 53.0 3.90e-01 100.0% 92.0%
3252332 825.1.1.5 beta complex topology › Aerolysin family of pore-forming toxins › Aerolysin family of pore-forming toxins › Aerolysin family of pore-forming toxins › BB_PF 0.59 42.0 3.26e-01 74.5% 83.6%
4167287 5104.1.1.0 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases 0.59 45.0 4.22e-01 82.7% 75.6%
4961473 304.165.1.2 a+b two layers › Alpha-beta plaits › Uncharacterized protein Ta1207 › Uncharacterized protein Ta1207 › BAT 0.58 53.0 4.62e-01 100.0% 91.7%
3948318 1.1.5.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.58 47.0 3.77e-01 87.8% 64.6%
5064589 7577.1.1.2 a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › Aminotran_3 0.58 41.0 2.72e-01 74.5% 54.3%
3717555 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.58 44.0 3.18e-01 82.7% 88.2%
3647550 331.2.1.0 a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain 0.57 38.0 4.06e-01 80.6% 77.6%
4244535 5104.1.1.0 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases 0.56 46.0 3.82e-01 87.8% 53.8%
3388778 5104.1.1.0 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases 0.56 43.0 4.03e-01 82.7% 80.0%
5000791 5104.1.1.0 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases 0.56 51.0 4.75e-01 100.0% 83.3%
4990121 241.1.1.0 a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone 0.55 43.0 4.27e-01 85.7% 78.1%
5042090 5104.1.1.1 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 0.55 49.0 4.44e-01 100.0% 80.7%
3316440 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.55 44.0 3.62e-01 86.7% 79.4%
5070287 5104.1.1.1 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 0.55 49.0 4.53e-01 100.0% 85.6%
4931371 5104.1.1.1 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 0.54 48.0 4.40e-01 100.0% 83.8%
4143106 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.54 36.0 4.06e-01 79.6% 95.7%
4418041 2006.1.1.11 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase_3 0.53 37.0 2.71e-01 72.4% 32.4%
4458167 5104.1.1.1 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 0.53 46.0 3.89e-01 100.0% 57.0%
5013018 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.53 40.0 3.67e-01 80.6% 60.8%
4939669 330.2.1.4 a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) › DUF2113 0.53 38.0 3.78e-01 73.5% 87.0%
5545 4354.1.1.1 a+b two layers › TRCF domain › TRCF domain › TRCF domain › TRCF 0.52 46.0 3.91e-01 95.9% 89.2%
4018312 844.1.1.0 beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain 0.52 46.0 3.68e-01 100.0% 85.4%
3613269 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.52 40.0 2.97e-01 82.7% 75.0%
3709967 5104.1.1.0 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases 0.51 45.0 4.13e-01 100.0% 90.0%
4028024 306.3.1.2 a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like › Img2 0.51 38.0 3.97e-01 82.7% 84.9%
1787814 242.1.1.1 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 0.51 41.0 3.57e-01 87.8% 79.1%
2092599 242.1.1.1 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 0.51 41.0 3.63e-01 87.8% 83.0%
4131749 242.1.1.1 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 0.51 41.0 3.99e-01 93.9% 78.2%
3556145 10.1.1.35 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_3 0.50 43.0 3.39e-01 95.9% 45.6%