←Back to structures
IMGVR_UViG_638276916_000001-638276916-638278282
Arc-VirIMGVR_UViG_638276916_000001-638276916-638278282
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-127
Domain cluster:
representative
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2va8A03 | 1.10.3380.30 | Mainly Alpha › Orthogonal Bundle › Sec63 N-terminal domain-like fold › | 0.64 | 45.0 | 3.73e-01 | 72.0% | 90.5% |
| 2nriB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.64 | 38.0 | 4.39e-01 | 72.8% | 80.4% |
| 5zyrA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.63 | 46.0 | 4.30e-01 | 74.4% | 79.5% |
| 2p6rA03 | 1.10.3380.30 | Mainly Alpha › Orthogonal Bundle › Sec63 N-terminal domain-like fold › | 0.63 | 43.0 | 3.59e-01 | 71.2% | 90.8% |
| 3boqA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.62 | 45.0 | 4.41e-01 | 89.6% | 68.9% |
| 3qphA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.61 | 36.0 | 4.06e-01 | 76.8% | 75.3% |
| 4fz2A01 | 3.40.1170.20 | Alpha Beta › 3-Layer(aba) Sandwich › MutS, DNA mismatch repair protein, domain I › tRNA intron endonuclease, N-terminal domain | 0.60 | 29.0 | 3.55e-01 | 76.8% | 72.0% |
| 2gauA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 38.0 | 4.60e-01 | 76.8% | 100.0% |
| 3r2cA00 | 1.10.940.10 | Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like | 0.59 | 42.0 | 4.07e-01 | 72.8% | 95.7% |
| 1dliA03 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.58 | 34.0 | 3.87e-01 | 87.2% | 77.8% |
| 2x4hA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.58 | 45.0 | 4.54e-01 | 86.4% | 80.6% |
| 5cvrA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.58 | 38.0 | 4.50e-01 | 79.2% | 100.0% |
| 3iuoA00 | 1.10.10.1390 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › ATP-dependent DNA helicase RecQ | 0.56 | 31.0 | 3.31e-01 | 81.6% | 59.6% |
| 1eyvB00 | 1.10.940.10 | Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like | 0.56 | 40.0 | 3.93e-01 | 73.6% | 100.0% |
| 3vsjA00 | 3.40.830.10 | Alpha Beta › 3-Layer(aba) Sandwich › Protocatechuate 4,5-dioxygenase; Chain B › LigB-like | 0.54 | 43.0 | 3.35e-01 | 83.2% | 87.0% |
| 1i7dA02 | 1.10.460.10 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; domain 2 › Topoisomerase I, domain 2 | 0.54 | 46.0 | 4.08e-01 | 92.0% | 92.8% |
| 2b48A00 | 1.10.437.10 | Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like | 0.51 | 36.0 | 3.48e-01 | 80.0% | 62.2% |
| 1xioA00 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.50 | 39.0 | 3.28e-01 | 82.4% | 79.7% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5029798 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.66 | 37.0 | 4.69e-01 | 79.2% | 97.1% |
| 3741847 | 544.1.1.0 ↗ | alpha bundles › Functional domain of the splicing factor Prp18 › Functional domain of the splicing factor Prp18 › Functional domain of the splicing factor Prp18 | 0.64 | 41.0 | 4.49e-01 | 95.2% | 80.6% |
| 4039721 | 101.1.2.652 ↗ | alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repr_C | 0.61 | 50.0 | 4.91e-01 | 86.4% | 85.9% |
| 2897635 | 3317.3.1.0 ↗ | alpha arrays › KorB C-terminal domain-like › Helical domain of Rubisco accumulation factor 1 › Helical domain of Rubisco accumulation factor 1 | 0.61 | 33.0 | 3.44e-01 | 70.4% | 55.7% |
| 5083863 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.60 | 43.0 | 3.67e-01 | 93.6% | 46.0% |
| 4993180 | 183.1.1.1 ↗ | alpha duplicates or obligate multimers › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain › Fe_dep_repr_C | 0.59 | 47.0 | 4.67e-01 | 87.2% | 80.8% |
| 4264627 | 101.1.2.19 ↗ | alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac | 0.56 | 48.0 | 4.24e-01 | 92.0% | 83.9% |
| 3935976 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.55 | 42.0 | 4.15e-01 | 87.2% | 74.1% |
| 5075048 | 608.1.1.1 ↗ | alpha arrays › AhpD-like › AhpD-like › AhpD-like › CMD | 0.55 | 40.0 | 4.04e-01 | 74.4% | 77.6% |
| 3954745 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 41.0 | 3.56e-01 | 80.0% | 73.7% |
| 4326467 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.53 | 37.0 | 3.54e-01 | 72.0% | 87.3% |
| 4440687 | 5060.1.1.2 ↗ | alpha bundles › V-type ATP synthase subunit C › V-type ATP synthase subunit C › V-type ATP synthase subunit C › DUF2764 | 0.51 | 45.0 | 3.68e-01 | 98.4% | 91.3% |
| 139433 | 5001.1.1.6 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Bac_rhodopsin | 0.50 | 39.0 | 3.18e-01 | 82.4% | 74.1% |