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IMGVR_UViG_643692049_000001-643692049-643840314

Arc-Vir

IMGVR_UViG_643692049_000001-643692049-643840314

Identity

Kingdom:
archaea

Quality

71.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-56
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4p1mB01 3.30.160.880 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Cell division protein ZapA protomer, N-terminal domain 0.59 37.0 4.05e-01 70.4% 77.8%
2napA02 3.40.50.740 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.55 40.0 2.61e-01 81.5% 78.6%
4p4tA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 41.0 2.57e-01 87.0% 46.6%
1cnzA00 3.40.718.10 Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase 0.54 39.0 2.45e-01 81.5% 35.0%
3axsA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.54 46.0 2.86e-01 100.0% 91.6%
3l5aA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.53 43.0 2.66e-01 94.4% 50.5%
1at9A00 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.52 41.0 2.84e-01 96.3% 62.2%
2f1lA01 2.40.30.60 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › RimM 0.51 36.0 3.14e-01 75.9% 56.2%
6uqjA02 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.51 37.0 2.34e-01 81.5% 22.3%
2jvfA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.51 40.0 3.53e-01 96.3% 76.6%
3rklA00 6.10.140.1640 Special › Helix non-globular › Helix Hairpins › 0.51 38.0 3.48e-01 87.0% 81.2%
4l7aA00 3.40.390.70 Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › 0.51 40.0 2.69e-01 96.3% 27.6%
2jmkA00 3.30.420.600 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Thermoplasma acidophilum protein TA0956 0.51 40.0 3.29e-01 92.6% 83.6%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.50 40.0 3.02e-01 98.1% 99.4%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3637662 4970.1.1.0 ↗ alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I 0.60 51.0 4.39e-01 94.4% 76.5%
3287895 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.56 46.0 2.86e-01 96.3% 79.2%
5038787 101.1.1.40 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Recombinase 0.56 41.0 3.45e-01 85.2% 89.1%
3405249 379.1.1.3 ↗ few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_2 0.56 37.0 3.74e-01 74.1% 67.9%
3335071 109.4.1.1285 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, Eplus_motif, E_motif 0.56 47.0 2.75e-01 100.0% 23.6%
3672250 207.1.1.116 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_FBXL15 0.55 38.0 2.70e-01 74.1% 23.2%
3868067 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.54 43.0 2.83e-01 100.0% 52.2%
5031824 2004.1.1.220 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SWI2_SNF2 0.54 44.0 2.62e-01 100.0% 25.0%
5001676 7604.1.1.1 ↗ a/b three-layered sandwiches › a/b domain in Acetophenone carboxylase (Apc) alpha subunit › a/b domain in Acetophenone carboxylase (Apc) alpha subunit › a/b domain in Acetophenone carboxylase (Apc) alpha subunit › Hydant_A_N 0.54 42.0 3.40e-01 90.7% 50.4%
3475431 133.1.1.0 ↗ alpha bundles › DH domain-like › DBL homology domain (DH-domain) › DBL homology domain (DH-domain) 0.53 42.0 2.90e-01 96.3% 76.7%
3839900 2004.1.1.220 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SWI2_SNF2 0.53 42.0 2.81e-01 94.4% 52.5%
4991318 150.2.1.1 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Cobalamin adenosyltransferase › Cobalamin adenosyltransferase › Cob_adeno_trans 0.53 44.0 3.16e-01 94.4% 52.5%
3681410 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.53 45.0 3.83e-01 100.0% 98.9%
3241842 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.53 38.0 3.11e-01 77.8% 89.5%
3615149 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.52 37.0 2.39e-01 77.8% 50.2%
3624854 376.1.2.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_1 0.52 35.0 3.03e-01 75.9% 41.1%
3810555 2499.1.1.1 ↗ a/b three-layered sandwiches › Subtilisin-like › Subtilisin-like › Subtilisin-like › Peptidase_S8 0.52 40.0 2.47e-01 92.6% 46.2%
3988217 241.12.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › YktB/PF0168-like › YktB/PF0168-like 0.52 41.0 2.83e-01 90.7% 36.0%
5032304 2004.1.1.97 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MobB 0.52 42.0 2.79e-01 92.6% 60.0%
4927432 616.1.1.0 ↗ alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain 0.51 38.0 3.41e-01 81.5% 100.0%
3213226 3075.1.1.0 ↗ a+b two layers › ubiquitin-binding domain from PLAA › ubiquitin-binding domain from PLAA › ubiquitin-binding domain from PLAA 0.50 39.0 3.76e-01 90.7% 75.4%