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IMGVR_UViG_646311943_000001-646311943-646531336

Arc-Vir

IMGVR_UViG_646311943_000001-646311943-646531336

Identity

Kingdom:
archaea

Quality

76.0 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 192-241
PDB
Domain cluster: representative
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3a1yA00 1.10.10.1410 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.89 61.0 5.84e-01 92.0% 62.1%
2oxlA00 1.20.5.5260 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.86 77.0 7.19e-01 100.0% 90.3%
1y8qC00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.70 59.0 3.68e-01 100.0% 18.6%
2lsoA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 58.0 4.94e-01 100.0% 56.6%
4efcA03 1.10.40.30 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) 0.68 59.0 5.51e-01 96.0% 86.9%
2pm6A00 1.25.40.1030 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.66 50.0 2.99e-01 92.0% 11.9%
4k35A04 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.66 47.0 4.74e-01 90.0% 76.0%
3frqB00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.65 47.0 3.24e-01 100.0% 21.7%
2gsvA00 6.10.140.40 Special › Helix non-globular › Helix Hairpins › 0.64 51.0 4.81e-01 100.0% 94.0%
1gcvA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.64 55.0 4.03e-01 100.0% 90.7%
2z16B01 1.20.91.10 Mainly Alpha › Up-down Bundle › Influenza Virus Matrix Protein; Chain A, domain 1 › Influenza matrix M1, N-terminal subdomain 1 0.63 57.0 4.90e-01 100.0% 75.6%
1l9lA00 1.10.225.10 Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like 0.63 51.0 4.67e-01 100.0% 68.9%
4nlbA02 1.10.150.80 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › HRDC domain 0.62 45.0 3.72e-01 80.0% 70.2%
2pjqA01 1.10.472.50 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › HD-domain/PDEase-like 0.61 46.0 3.92e-01 100.0% 48.3%
3cqcB01 1.20.58.1380 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.61 49.0 4.07e-01 90.0% 55.6%
2bkkC02 3.90.1200.10 Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe 0.60 48.0 3.50e-01 100.0% 80.9%
6orkA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.59 46.0 2.95e-01 86.0% 18.4%
2gomA00 1.10.10.1270 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Sbi, C3 binding domain IV 0.58 44.0 4.22e-01 90.0% 70.5%
2bbwA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.56 45.0 2.96e-01 90.0% 71.4%
2xb4A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.56 45.0 3.07e-01 100.0% 33.2%
1ed1A00 1.10.150.90 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Immunodeficiency lentiviruses, gag gene matrix protein p17 0.55 47.0 3.68e-01 100.0% 43.9%
2w9yA00 1.20.120.1100 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.54 47.0 3.48e-01 100.0% 38.2%
3ju1B00 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.54 46.0 2.79e-01 100.0% 34.7%
3rjvA02 1.25.40.740 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.53 41.0 3.91e-01 90.0% 70.3%
3dtoA01 1.10.472.50 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › HD-domain/PDEase-like 0.53 43.0 3.61e-01 100.0% 51.1%
1m62A00 1.20.58.120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain 0.53 45.0 3.83e-01 98.0% 75.9%
5hayA02 1.25.40.440 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Nucleoporin, helical domain, central subdomain 0.53 41.0 3.61e-01 90.0% 60.8%
1u5pA01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.51 43.0 3.42e-01 98.0% 71.3%
2nr4A02 1.20.58.290 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hypothetical membrane protein ta0354_69_121. 0.51 42.0 4.04e-01 100.0% 81.0%
2idgA00 1.10.3480.10 Mainly Alpha › Orthogonal Bundle › TorD-like › TorD-like 0.51 44.0 3.11e-01 100.0% 39.6%
ECOD (33)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5026703 2004.1.1.76 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF87 0.88 80.0 4.68e-01 100.0% 14.0%
4009124 639.2.1.5 alpha arrays › HHA-like › Regulator of acid resistance influenced by indole (AriR) › Regulator of acid resistance influenced by indole (AriR) › PF27475 0.86 77.0 7.29e-01 100.0% 93.3%
4976733 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.86 77.0 4.50e-01 100.0% 19.7%
3889516 101.1.2.206 alpha arrays › HTH › HTH › winged helix domain › SAMD1_WH 0.86 69.0 5.26e-01 100.0% 41.0%
3943035 639.2.1.0 alpha arrays › HHA-like › Regulator of acid resistance influenced by indole (AriR) › Regulator of acid resistance influenced by indole (AriR) 0.85 76.0 6.95e-01 100.0% 86.2%
4970797 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.84 75.0 4.42e-01 100.0% 14.7%
3404571 101.1.2.206 alpha arrays › HTH › HTH › winged helix domain › SAMD1_WH 0.84 68.0 5.69e-01 100.0% 53.8%
5053823 2004.1.1.76 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF87 0.84 75.0 4.40e-01 100.0% 14.6%
5001714 2004.1.1.76 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF87 0.84 75.0 4.35e-01 100.0% 13.2%
4958393 2004.1.1.76 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF87 0.83 71.0 4.17e-01 100.0% 12.6%
5058493 2004.1.1.76 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF87 0.82 72.0 4.25e-01 100.0% 14.3%
3472278 101.1.2.206 alpha arrays › HTH › HTH › winged helix domain › SAMD1_WH 0.81 62.0 5.50e-01 100.0% 57.3%
3490008 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.80 62.0 5.74e-01 100.0% 66.2%
5071736 2004.1.1.277 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › HerA_C 0.78 68.0 3.97e-01 100.0% 26.2%
5042552 2004.1.1.76 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF87 0.77 66.0 3.96e-01 100.0% 14.8%
3696232 109.3.1.0 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.75 66.0 4.07e-01 100.0% 16.9%
5054820 2004.1.1.76 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF87 0.74 66.0 3.82e-01 100.0% 12.0%
3992791 3843.1.1.0 alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K 0.70 49.0 3.96e-01 74.0% 65.3%
5048987 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.69 53.0 5.26e-01 100.0% 81.5%
5067843 101.35.1.0 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.68 53.0 5.35e-01 100.0% 92.0%
3926114 223.2.1.6 a+b three layers › Profilin-like › profilin-like › profilin-like › uDENN 0.63 48.0 3.13e-01 86.0% 23.4%
5005260 2008.1.1.59 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.61 53.0 3.36e-01 100.0% 58.5%
4322551 604.23.1.0 alpha bundles › Spectrin repeat-like › Sbi complement-binding domain › Sbi complement-binding domain 0.61 45.0 4.41e-01 92.0% 74.5%
4238791 604.15.1.3 alpha bundles › Spectrin repeat-like › Efb C-domain-like › Efb C-domain-like › GA_3 0.60 39.0 3.95e-01 98.0% 68.0%
4441814 604.15.1.0 alpha bundles › Spectrin repeat-like › Efb C-domain-like › Efb C-domain-like 0.60 40.0 3.91e-01 100.0% 63.6%
4167208 604.15.1.0 alpha bundles › Spectrin repeat-like › Efb C-domain-like › Efb C-domain-like 0.58 43.0 4.12e-01 92.0% 68.3%
4985898 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 44.0 3.85e-01 100.0% 53.3%
4037022 604.15.1.1 alpha bundles › Spectrin repeat-like › Efb C-domain-like › Efb C-domain-like › efb-c 0.56 45.0 4.38e-01 92.0% 81.8%
4031198 604.15.1.2 alpha bundles › Spectrin repeat-like › Efb C-domain-like › Efb C-domain-like › Sbi-IV 0.56 44.0 4.35e-01 98.0% 80.0%
2429103 109.4.1.109 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Sel1 0.56 43.0 2.70e-01 90.0% 14.5%
3271631 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.55 40.0 2.90e-01 80.0% 42.7%
4033104 604.15.1.0 alpha bundles › Spectrin repeat-like › Efb C-domain-like › Efb C-domain-like 0.54 41.0 3.85e-01 98.0% 67.7%
3682134 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.52 45.0 4.29e-01 98.0% 83.3%
D2 medium residues 64-189
PDB
Domain cluster: representative
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2xzmE01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.74 37.0 3.92e-01 78.6% 53.4%
3n8bA00 3.10.450.700 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.66 32.0 3.96e-01 77.0% 74.7%
1of5B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 33.0 3.30e-01 77.8% 52.3%
3gd6A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.58 43.0 4.10e-01 74.6% 93.7%
3doaA01 2.30.310.10 Mainly Beta › Roll › ibrinogen binding protein from staphylococcus aureus fold › ibrinogen binding protein from staphylococcus aureus domain 0.57 34.0 3.19e-01 73.0% 47.7%
4qn0B00 3.40.570.10 Alpha Beta › 3-Layer(aba) Sandwich › Extracellular Endonuclease; Chain A › Extracellular Endonuclease, subunit A 0.54 39.0 3.21e-01 74.6% 87.0%
2zadA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.54 40.0 4.18e-01 78.6% 97.4%
3er7B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 29.0 2.96e-01 76.2% 51.2%
1kczA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.53 40.0 3.71e-01 79.4% 87.7%
6ksrA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.53 40.0 3.66e-01 100.0% 61.3%
3cawA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.53 37.0 4.27e-01 95.2% 100.0%
3px5A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.53 39.0 4.06e-01 77.8% 96.6%
1nbwA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.53 38.0 3.74e-01 100.0% 69.7%
3jvaA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.53 39.0 4.10e-01 78.6% 95.6%
3ik4B01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.53 40.0 4.11e-01 80.2% 94.1%
3ddmA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.52 39.0 3.93e-01 78.6% 88.0%
3rcyB01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.52 38.0 3.75e-01 77.8% 75.9%
1uliB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 33.0 2.99e-01 95.2% 45.8%
4jhmA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.52 39.0 4.09e-01 80.2% 94.9%
3hx8A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 29.0 2.94e-01 75.4% 52.3%
2oztA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.52 38.0 4.00e-01 77.8% 90.7%
1jmxA02 2.40.128.120 Mainly Beta › Beta Barrel › Lipocalin › Quinohemoprotein amine dehydrogenase alpha subunit, domain 2 0.50 34.0 3.68e-01 100.0% 80.7%
2x8fA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.50 36.0 2.70e-01 73.8% 48.0%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5030556 330.1.1.2 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Ribosomal_S5 0.74 38.0 4.58e-01 78.6% 74.1%
3786132 330.1.1.4 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Rad52_Rad22 0.71 46.0 4.36e-01 77.0% 56.6%
3279698 2004.1.1.711 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PF27531 0.64 30.0 2.62e-01 72.2% 28.4%
3219090 243.1.1.47 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF5390 0.63 32.0 3.28e-01 75.4% 48.8%
3961916 243.1.1.10 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL 0.60 31.0 3.31e-01 75.4% 53.0%
3217156 243.1.1.46 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF5382 0.60 33.0 3.26e-01 81.0% 49.3%
3445705 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.58 24.0 3.19e-01 75.4% 68.6%
4827722 9.13.1.5 beta barrels › Lipocalins/Streptavidin › AOC barrel-like › AOC barrel-like › AOC_like 0.56 33.0 3.80e-01 99.2% 80.7%
3514912 284.1.3.0 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.56 33.0 4.11e-01 100.0% 97.3%
3699383 378.1.1.1 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › Endonuclease_NS 0.56 40.0 3.13e-01 73.8% 79.3%
4534466 284.1.3.0 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.55 34.0 3.81e-01 100.0% 81.1%
4593266 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.54 26.0 3.35e-01 95.2% 77.3%
3433055 708.1.1.0 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.54 30.0 2.95e-01 78.6% 48.9%
3285746 243.1.1.26 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_4 0.54 33.0 3.17e-01 87.3% 49.0%
4237498 330.6.1.1 a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer 0.53 39.0 4.00e-01 100.0% 76.8%
6400 243.1.1.18 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.53 28.0 2.89e-01 74.6% 50.8%
3609908 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.53 35.0 3.79e-01 92.9% 78.2%
3261242 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.52 36.0 3.21e-01 71.4% 65.8%
3210912 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.52 30.0 3.56e-01 96.0% 84.7%
3285634 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 29.0 3.35e-01 94.4% 77.8%
5004264 330.6.1.1 a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer 0.51 38.0 3.90e-01 100.0% 79.7%
165087 218.1.1.1 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N 0.50 37.0 3.53e-01 78.6% 77.9%
4943678 4178.1.1.0 beta sandwiches › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain 0.50 29.0 3.42e-01 100.0% 83.5%