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IMGVR_UViG_646564555_000004-646564555-646645403

Arc-Vir

IMGVR_UViG_646564555_000004-646564555-646645403

Identity

Kingdom:
archaea

Quality

87.8 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-164
PDB
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1y12B00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.66 51.0 5.17e-01 91.1% 81.4%
3eaaA00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.65 52.0 5.21e-01 91.1% 81.5%
4w64B00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.65 52.0 5.22e-01 91.1% 83.1%
4divV01 2.40.30.200 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.62 48.0 5.14e-01 91.8% 94.2%
4hkhA00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.62 50.0 5.17e-01 91.1% 89.9%
3beuA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.61 32.0 3.92e-01 89.2% 79.8%
2q9kA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.60 42.0 4.42e-01 99.4% 76.9%
3he1A00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.60 48.0 4.98e-01 92.4% 90.5%
3tvjB02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.59 33.0 3.88e-01 87.3% 78.5%
3bp6B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 32.0 4.08e-01 82.3% 92.0%
7dl8C01 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.58 31.0 3.96e-01 92.4% 89.9%
2ca9A02 3.30.70.1150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 0.58 29.0 3.78e-01 77.8% 84.3%
2ptfA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 42.0 4.39e-01 93.0% 84.4%
3kg0A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 30.0 3.69e-01 76.6% 85.6%
4r6uA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 31.0 3.66e-01 83.5% 83.5%
1lp9E02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 27.0 3.51e-01 81.0% 92.5%
2w59A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 31.0 3.77e-01 82.9% 91.0%
6ue9L02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 32.0 3.61e-01 83.5% 78.7%
3pg1A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.52 29.0 3.16e-01 88.6% 65.1%
ECOD (48)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4929634 1.1.5.47 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_tube_2 0.80 67.0 5.50e-01 100.0% 51.1%
4954551 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.80 65.0 7.03e-01 98.1% 98.5%
2642579 1.1.13.6 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tail_2 0.79 61.0 6.65e-01 92.4% 96.2%
4954552 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.77 66.0 6.61e-01 93.0% 88.1%
4957560 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.77 60.0 6.57e-01 90.5% 98.5%
3502370 1.1.5.47 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_tube_2 0.76 69.0 6.94e-01 96.2% 97.5%
5003885 1.1.5.24 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 0.76 61.0 6.38e-01 91.8% 91.0%
5079559 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.75 52.0 6.08e-01 89.2% 97.4%
3964955 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.75 66.0 6.58e-01 92.4% 98.1%
5078836 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.75 51.0 6.07e-01 91.1% 99.1%
5040331 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.74 65.0 6.84e-01 96.8% 100.0%
4988100 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.73 55.0 6.12e-01 90.5% 99.2%
2101633 1.1.13.1 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tube 0.73 57.0 5.67e-01 93.0% 77.8%
2471637 1.1.5.24 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 0.72 60.0 6.16e-01 91.8% 92.6%
3058416 1.1.5.39 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › TssD 0.72 50.0 5.54e-01 91.1% 89.0%
3942828 1.1.13.39 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › KPP10_Orf10 0.71 57.0 6.00e-01 90.5% 91.7%
3976188 1.1.13.1 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tube 0.71 57.0 5.69e-01 93.0% 80.6%
4947204 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.71 49.0 5.57e-01 90.5% 93.3%
3943691 1.1.13.5 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_GPD 0.69 41.0 5.09e-01 86.7% 96.8%
2674670 1.1.13.6 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tail_2 0.69 64.0 6.21e-01 99.4% 93.6%
3059162 1.1.13.30 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › E217_GP41 0.67 49.0 5.53e-01 88.6% 96.0%
3590380 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.67 60.0 5.75e-01 96.2% 92.2%
4929752 1.1.5.23 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP 0.67 53.0 5.37e-01 91.1% 83.9%
1117606 1.1.13.17 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Dit_N 0.67 53.0 5.67e-01 89.2% 98.5%
4954561 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.66 54.0 5.76e-01 90.5% 100.0%
1563850 1.1.5.23 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP 0.65 52.0 5.22e-01 91.1% 83.1%
4009489 1.1.5.23 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP 0.64 52.0 5.26e-01 90.5% 85.8%
4982153 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.64 51.0 4.25e-01 91.8% 49.3%
4033579 1.1.13.4 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Sipho_tail 0.63 48.0 5.32e-01 87.3% 100.0%
3969384 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.63 51.0 5.15e-01 91.1% 85.0%
1444177 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.62 47.0 5.07e-01 90.5% 93.4%
4034209 1.1.13.4 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Sipho_tail 0.62 50.0 5.38e-01 88.6% 100.0%
5056723 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.61 35.0 4.43e-01 84.2% 93.7%
4032562 1.1.13.4 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Sipho_tail 0.61 47.0 5.09e-01 88.6% 99.2%
164720 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.60 42.0 4.42e-01 99.4% 76.9%
3265120 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.60 51.0 5.00e-01 91.1% 81.7%
4888732 1.1.13.4 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Sipho_tail 0.60 47.0 4.76e-01 92.4% 83.3%
3977123 1.1.5.23 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP 0.60 51.0 5.15e-01 93.0% 90.6%
3264744 1.1.5.23 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP 0.59 51.0 4.93e-01 92.4% 82.9%
184986 1.1.13.4 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Sipho_tail 0.58 44.0 4.86e-01 89.9% 99.2%
3615541 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.56 42.0 4.69e-01 84.2% 98.4%
3586381 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 34.0 4.01e-01 81.0% 86.4%
3165990 310.3.1.22 a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related › PF27480, PF30181 0.54 36.0 4.20e-01 88.6% 92.2%
3557988 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 32.0 3.43e-01 84.8% 65.0%
4454809 11.1.1.96 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C1-set 0.53 33.0 3.75e-01 82.3% 82.5%
4927424 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 37.0 3.96e-01 97.5% 83.7%
3481575 11.1.1.54 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CBM_21 0.51 34.0 3.53e-01 82.3% 73.1%
5454 304.124.1.2 a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like › Gp37 0.51 38.0 4.05e-01 89.2% 91.8%
D2 high residues 166-191_215-296
PDB
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3eaaA00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.79 73.0 6.29e-01 99.1% 83.3%
1y12B00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.78 72.0 6.30e-01 99.1% 82.7%
4w64B00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.76 69.0 5.99e-01 98.1% 84.4%
4ybnB00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.60 54.0 4.38e-01 100.0% 66.8%
2hq9B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.59 54.0 4.99e-01 100.0% 89.1%
4xrtA02 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.58 32.0 2.79e-01 98.1% 33.8%
1lp9E02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 36.0 4.02e-01 84.3% 82.5%
5yjlD01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.57 52.0 4.73e-01 100.0% 77.5%
7k0xA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 38.0 4.42e-01 85.2% 100.0%
6wubf01 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.55 36.0 3.82e-01 77.8% 75.5%
1xuvA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.53 42.0 3.71e-01 85.2% 84.7%
6y43A01 3.90.215.10 Alpha Beta › Alpha-Beta Complex › Gamma Fibrinogen; Chain A, domain 1 › Gamma Fibrinogen, chain A, domain 1 0.52 44.0 3.92e-01 92.6% 65.3%
1rypD00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.52 38.0 2.93e-01 75.9% 84.2%
3uc2A00 2.60.40.3340 Mainly Beta › Sandwich › Immunoglobulin-like › Domain of unknown function DUF4426 0.52 34.0 3.30e-01 75.0% 58.1%
6muwH00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.51 36.0 3.00e-01 75.0% 96.4%
1m1jE01 3.90.215.10 Alpha Beta › Alpha-Beta Complex › Gamma Fibrinogen; Chain A, domain 1 › Gamma Fibrinogen, chain A, domain 1 0.51 43.0 3.82e-01 92.6% 67.7%
ECOD (38)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4140243 1.1.5.82 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF2001 0.87 83.0 8.09e-01 100.0% 97.4%
5003885 1.1.5.24 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 0.85 80.0 7.16e-01 100.0% 93.1%
3964955 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.85 79.0 6.77e-01 98.1% 99.4%
5004308 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.85 80.0 6.94e-01 100.0% 94.8%
3502370 1.1.5.47 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_tube_2 0.83 77.0 6.66e-01 99.1% 92.5%
2471641 1.1.5.24 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 0.83 78.0 6.87e-01 100.0% 89.9%
4929634 1.1.5.47 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_tube_2 0.82 78.0 5.64e-01 100.0% 46.3%
2832217 1.1.5.24 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 0.82 77.0 6.91e-01 100.0% 95.8%
4032554 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.81 74.0 6.32e-01 98.1% 83.0%
2101633 1.1.13.1 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tube 0.81 76.0 6.42e-01 100.0% 77.8%
2471637 1.1.5.24 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 0.81 75.0 6.64e-01 100.0% 94.6%
2832216 1.1.5.24 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 0.80 75.0 6.58e-01 100.0% 96.1%
3976188 1.1.13.1 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tube 0.80 75.0 6.42e-01 100.0% 80.6%
5078836 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.80 74.0 7.39e-01 97.2% 99.1%
3589778 1.1.5.78 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_TTP_1 0.80 74.0 6.26e-01 100.0% 90.0%
4157825 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.80 75.0 6.94e-01 98.1% 98.5%
5079559 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.80 71.0 6.97e-01 94.4% 99.1%
3058416 1.1.5.39 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › TssD 0.80 74.0 6.99e-01 99.1% 92.1%
4009489 1.1.5.23 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP 0.79 74.0 6.45e-01 99.1% 88.4%
3969384 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.79 74.0 6.37e-01 99.1% 86.3%
3265120 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.79 74.0 6.15e-01 99.1% 83.4%
136185 1.1.5.23 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP 0.79 73.0 6.29e-01 99.1% 83.3%
3977123 1.1.5.23 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP 0.79 73.0 6.31e-01 99.1% 83.7%
4878666 1.1.5.23 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP 0.78 72.0 6.56e-01 98.1% 90.6%
80 1.1.5.23 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP 0.78 72.0 6.22e-01 99.1% 83.1%
3264744 1.1.5.23 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP 0.78 72.0 6.01e-01 99.1% 83.4%
3942828 1.1.13.39 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › KPP10_Orf10 0.77 71.0 6.40e-01 100.0% 95.9%
4810019 1.1.13.57 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › PF30637 0.66 57.0 5.74e-01 94.4% 99.1%
4014778 1.1.5.10 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.65 59.0 4.55e-01 99.1% 69.4%
3287036 331.3.1.27 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › DUF2505 0.64 33.0 2.82e-01 100.0% 31.2%
3591908 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.62 53.0 4.51e-01 95.4% 73.9%
4030357 1.1.7.25 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › AARP2CN 0.61 40.0 4.31e-01 89.8% 80.0%
3208996 206.1.1.11 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH 0.60 43.0 3.24e-01 100.0% 30.8%
3597001 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.57 39.0 3.36e-01 70.4% 69.1%
5003610 3153.1.1.0 a+b two layers › PipX › PipX › PipX 0.53 30.0 3.20e-01 100.0% 63.2%
2629710 4252.1.1.3 beta barrels › AttH-like › AttH-like › AttH-like › DA_C 0.53 39.0 3.42e-01 95.4% 51.8%
4670273 868.1.1.8 a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › SLS1_C 0.51 38.0 2.91e-01 77.8% 53.2%
3303879 331.3.1.43 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PDF2_C 0.51 39.0 3.04e-01 82.4% 77.9%