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IMGVR_UViG_646564555_000004-646564555-646645407
Arc-VirIMGVR_UViG_646564555_000004-646564555-646645407
Identity
- Kingdom:
- archaea
Quality
82.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 12-82
Domain cluster:
representative
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2qmxA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.66 | 43.0 | 3.94e-01 | 70.4% | 52.2% |
| 2wcrB00 | 3.10.129.140 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Helicobacter TNF-alpha-Inducing protein | 0.61 | 45.0 | 3.54e-01 | 77.5% | 84.9% |
| 2g3aA02 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.60 | 35.0 | 3.06e-01 | 73.2% | 38.1% |
| 2dchX01 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.59 | 46.0 | 4.18e-01 | 90.1% | 63.4% |
| 3mwbA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.59 | 39.0 | 3.51e-01 | 71.8% | 50.0% |
| 3fgeA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.57 | 40.0 | 3.06e-01 | 73.2% | 57.6% |
| 3gbnL02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 29.0 | 3.50e-01 | 94.4% | 78.0% |
| 3wirA01 | 2.70.98.40 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Glycoside hydrolase, family 65, N-terminal domain | 0.56 | 45.0 | 3.16e-01 | 91.5% | 87.5% |
| 3kp0A03 | 3.30.30.60 | Alpha Beta › 2-Layer Sandwich › Defensin A-like › D-lysine 5,6-aminomutase beta subunit KamE, N-terminal domain | 0.55 | 38.0 | 3.91e-01 | 73.2% | 76.1% |
| 1vmbA00 | 3.30.70.60 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B | 0.55 | 48.0 | 4.23e-01 | 98.6% | 75.7% |
| 4bhqA00 | 3.30.70.2830 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 37.0 | 3.22e-01 | 73.2% | 45.0% |
| 4lfhD02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 42.0 | 4.03e-01 | 100.0% | 71.8% |
| 4pbdA00 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.54 | 47.0 | 4.20e-01 | 98.6% | 79.4% |
| 3rgfA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.54 | 37.0 | 3.38e-01 | 74.6% | 53.1% |
| 3kyfA02 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.54 | 39.0 | 3.31e-01 | 76.1% | 58.1% |
| 5xyiY00 | 3.30.70.3370 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 37.0 | 3.32e-01 | 73.2% | 52.4% |
| 4euuA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.53 | 37.0 | 3.50e-01 | 74.6% | 60.7% |
| 6k3lB02 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.53 | 36.0 | 3.32e-01 | 70.4% | 56.0% |
| 1qr0A01 | 3.90.470.20 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain | 0.53 | 45.0 | 3.83e-01 | 100.0% | 97.6% |
| 1qd1A01 | 3.30.990.10 | Alpha Beta › 2-Layer Sandwich › Formiminotransferase-cyclodeaminase; Chain B, domain 1 › Formiminotransferase, N-terminal subdomain | 0.52 | 43.0 | 3.28e-01 | 100.0% | 37.2% |
| 3tupA02 | 3.30.70.380 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ferrodoxin-fold anticodon-binding domain | 0.52 | 44.0 | 4.07e-01 | 100.0% | 86.5% |
| 3oajA02 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.52 | 42.0 | 3.36e-01 | 90.1% | 62.5% |
| 4oi3A00 | 3.30.70.3090 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ORF SCO4226, nickel-binding ferredoxin-like monomer | 0.52 | 40.0 | 3.87e-01 | 83.1% | 98.8% |
| 4paaA05 | 2.40.30.110 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains | 0.50 | 43.0 | 4.17e-01 | 95.8% | 87.3% |
| 3njfA00 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.50 | 35.0 | 3.08e-01 | 73.2% | 78.6% |
| 2zylA01 | 2.102.10.10 | Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain | 0.50 | 40.0 | 3.27e-01 | 87.3% | 88.9% |
ECOD (29)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5053811 | 328.5.1.1 ↗ | a+b two layers › IF3-like › SirA-like › SirA-like › TusA | 0.65 | 41.0 | 4.12e-01 | 73.2% | 62.2% |
| 4991604 | 7523.1.1.5 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › PDT | 0.65 | 42.0 | 3.63e-01 | 71.8% | 42.7% |
| 3342763 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.61 | 44.0 | 2.90e-01 | 76.1% | 20.7% |
| 4007401 | 4.1.1.393 ↗ | beta barrels › SH3 › SH3 › SH3 › PF29414 | 0.57 | 41.0 | 3.50e-01 | 74.6% | 51.8% |
| 4002521 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.56 | 40.0 | 3.31e-01 | 76.1% | 45.4% |
| 5049188 | 872.5.1.1 ↗ | a+b two layers › Dodecin subunit-like › D-lysine 5,6-aminomutase beta subunit KamE, N-terminal domain › D-lysine 5,6-aminomutase beta subunit KamE, N-terminal domain › OAM_dimer | 0.56 | 39.0 | 3.78e-01 | 74.6% | 65.0% |
| 5026237 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.55 | 42.0 | 3.97e-01 | 81.7% | 97.6% |
| 3331837 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.55 | 39.0 | 2.71e-01 | 74.6% | 25.2% |
| 3248628 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.55 | 39.0 | 2.64e-01 | 77.5% | 33.1% |
| 3924360 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.55 | 39.0 | 2.44e-01 | 74.6% | 20.4% |
| 3410135 | 304.49.1.4 ↗ | a+b two layers › Alpha-beta plaits › TRADD, N-terminal domain/Dystroglycan, domain 2 › TRADD, N-terminal domain/Dystroglycan, domain 2 › DAG1 | 0.55 | 47.0 | 4.03e-01 | 98.6% | 80.8% |
| 4939518 | 304.4.1.82 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › DUF3303 | 0.54 | 44.0 | 4.18e-01 | 98.6% | 76.5% |
| 4960332 | 284.4.1.0 ↗ | a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain | 0.54 | 36.0 | 3.53e-01 | 70.4% | 93.8% |
| 3499425 | 304.18.1.1 ↗ | a+b two layers › Alpha-beta plaits › Anticodon-binding domain of PheRS › Anticodon-binding domain of PheRS › FDX-ACB | 0.53 | 46.0 | 4.01e-01 | 97.2% | 89.0% |
| 3761477 | 1.1.8.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GCV_T_C | 0.53 | 45.0 | 3.88e-01 | 95.8% | 73.9% |
| 3257478 | 3156.1.1.27 ↗ | beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related › PF26737 | 0.52 | 35.0 | 3.37e-01 | 70.4% | 77.6% |
| 3027089 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 37.0 | 3.58e-01 | 100.0% | 64.4% |
| 3584856 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.52 | 44.0 | 3.87e-01 | 98.6% | 61.8% |
| 3331686 | 304.109.1.4 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e › Ribosomal_S24e | 0.52 | 36.0 | 3.37e-01 | 73.2% | 63.3% |
| 3978295 | 107.1.1.18 ↗ | alpha arrays › Cytochrome c-like › Cytochrome c › Cytochrome c › PF29414 | 0.52 | 41.0 | 2.98e-01 | 85.9% | 63.0% |
| 5068348 | 11.12.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Nicotinic receptor ligand binding domain-like › Nicotinic receptor ligand binding domain-like | 0.52 | 45.0 | 3.51e-01 | 100.0% | 50.3% |
| 3969826 | 304.28.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › ACR_tran | 0.51 | 44.0 | 3.88e-01 | 100.0% | 85.5% |
| 3568840 | 1.1.8.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GCV_T_C | 0.51 | 45.0 | 4.08e-01 | 97.2% | 78.9% |
| 3997269 | 1.1.8.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GCV_T_C | 0.51 | 44.0 | 3.91e-01 | 97.2% | 76.7% |
| 4966046 | 1.1.8.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GCV_T_C | 0.51 | 41.0 | 3.88e-01 | 87.3% | 97.6% |
| 3394046 | 1.1.8.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GCV_T_C | 0.51 | 44.0 | 4.03e-01 | 97.2% | 78.9% |
| 3538813 | 304.27.1.2 ↗ | a+b two layers › Alpha-beta plaits › Formiminotransferase domain of formiminotransferase-cyclodeaminase. › Formiminotransferase domain of formiminotransferase-cyclodeaminase. › FTCD_N | 0.51 | 40.0 | 3.39e-01 | 88.7% | 98.4% |
| 5021963 | 304.8.1.116 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › DUF3303 | 0.50 | 41.0 | 3.65e-01 | 98.6% | 61.9% |
| 4543745 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.50 | 44.0 | 2.65e-01 | 100.0% | 15.2% |