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IMGVR_UViG_648028029_000001-648028029-648062639
Arc-VirIMGVR_UViG_648028029_000001-648028029-648062639
Identity
- Kingdom:
- archaea
Quality
80.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-128
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01541.31 best | GIY-YIG | 25.1 | 2.40e-05 | 52.8% | 56.4% |
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7tuvA02 | 2.40.50.700 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.54 | 26.0 | 3.02e-01 | 70.4% | 59.8% |
| 2w82A01 | 3.10.20.480 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Antirestriction protein ArdA, domain 1 | 0.54 | 27.0 | 3.61e-01 | 93.6% | 98.3% |
| 4e84B00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.53 | 37.0 | 2.79e-01 | 71.2% | 44.5% |
| 4dunA01 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.52 | 35.0 | 3.56e-01 | 94.4% | 67.7% |
| 1qyaB01 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.51 | 36.0 | 3.46e-01 | 94.4% | 62.5% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3971569 | 821.1.1.0 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.83 | 53.0 | 6.48e-01 | 94.4% | 96.5% |
| 4669741 | 821.1.1.1 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG | 0.83 | 52.0 | 6.00e-01 | 89.6% | 84.2% |
| 4557537 | 821.1.1.1 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG | 0.82 | 53.0 | 6.28e-01 | 94.4% | 91.1% |
| 4397568 | 821.1.1.1 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG | 0.82 | 52.0 | 6.16e-01 | 92.8% | 90.0% |
| 5046850 | 821.1.1.1 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG | 0.81 | 52.0 | 6.06e-01 | 94.4% | 90.0% |
| 5070409 | 821.1.1.0 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.70 | 45.0 | 5.21e-01 | 72.0% | 90.9% |
| 5030770 | 821.1.1.0 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.70 | 45.0 | 5.04e-01 | 72.0% | 85.3% |
| 3395814 | 382.1.1.6 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › QVR | 0.63 | 32.0 | 3.54e-01 | 99.2% | 59.0% |
| 3929121 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.63 | 34.0 | 3.60e-01 | 83.2% | 58.3% |
| 3256773 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.62 | 35.0 | 3.26e-01 | 86.4% | 43.5% |
| 4160981 | 821.1.1.1 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG | 0.61 | 57.0 | 4.72e-01 | 100.0% | 69.5% |
| 4100104 | 821.1.1.1 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG | 0.61 | 56.0 | 4.56e-01 | 100.0% | 61.3% |
| 4651815 | 821.1.1.1 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG | 0.60 | 55.0 | 4.86e-01 | 100.0% | 76.1% |
| 4138617 | 821.1.1.1 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG | 0.59 | 55.0 | 4.62e-01 | 100.0% | 65.4% |
| 4668972 | 821.1.1.0 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.58 | 54.0 | 4.67e-01 | 100.0% | 72.3% |
| 4398485 | 821.1.1.1 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG | 0.58 | 54.0 | 4.24e-01 | 100.0% | 51.2% |
| 3489385 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.58 | 35.0 | 3.55e-01 | 95.2% | 60.0% |
| 4986747 | 1.1.1.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease | 0.57 | 32.0 | 2.81e-01 | 80.8% | 34.9% |
| 4175430 | 1119.1.1.1 ↗ | a+b complex topology › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › BioW | 0.55 | 45.0 | 3.63e-01 | 88.0% | 97.5% |
| 4179371 | 1119.1.1.1 ↗ | a+b complex topology › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › BioW | 0.55 | 44.0 | 3.59e-01 | 87.2% | 98.0% |
| 4057352 | 1119.1.1.1 ↗ | a+b complex topology › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › BioW | 0.54 | 44.0 | 3.55e-01 | 88.0% | 95.7% |
| 4682624 | 4943.1.1.1 ↗ | a+b two layers › YcgL/NE1680-like › YcgL/NE1680-like › YcgL/NE1680-like › YcgL | 0.53 | 34.0 | 3.94e-01 | 76.8% | 95.3% |
| 3703916 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.52 | 32.0 | 3.72e-01 | 87.2% | 86.7% |
| 4429346 | 299.1.1.1 ↗ | a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit | 0.51 | 37.0 | 3.60e-01 | 92.8% | 69.6% |
D2
medium
residues 134-189
Domain cluster:
representative
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2gsbA01 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.68 | 56.0 | 4.98e-01 | 94.6% | 66.7% |
| 1ayaA00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.67 | 55.0 | 4.60e-01 | 94.6% | 55.4% |
| 1x6cA00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.65 | 55.0 | 4.40e-01 | 98.2% | 57.6% |
| 2xf1A00 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.65 | 53.0 | 4.21e-01 | 94.6% | 63.9% |
| 4lubB01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.62 | 44.0 | 3.64e-01 | 75.0% | 95.0% |
| 4dlqA03 | 2.60.220.50 | Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › | 0.62 | 46.0 | 3.22e-01 | 82.1% | 91.4% |
| 2ci8A01 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.62 | 50.0 | 5.04e-01 | 94.6% | 98.2% |
| 1i3zA00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.62 | 49.0 | 4.13e-01 | 92.9% | 53.4% |
| 6em3x01 | 3.40.50.10480 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Brix domain | 0.61 | 51.0 | 3.65e-01 | 100.0% | 91.4% |
| 2r6fA03 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.59 | 43.0 | 4.03e-01 | 75.0% | 62.5% |
| 1bwzA01 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.59 | 48.0 | 3.81e-01 | 96.4% | 79.5% |
| 3fg8A00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.59 | 43.0 | 3.57e-01 | 80.4% | 52.8% |
| 2yfqB03 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.58 | 43.0 | 3.29e-01 | 82.1% | 58.6% |
| 3fveA01 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.57 | 46.0 | 3.51e-01 | 96.4% | 74.7% |
| 3hf7A00 | 3.10.580.10 | Alpha Beta › Roll › CBS-domain › CBS-domain | 0.56 | 43.0 | 3.42e-01 | 87.5% | 54.3% |
| 1zczA03 | 3.40.140.20 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › AICAR transformylase, duplication domain | 0.56 | 44.0 | 3.58e-01 | 96.4% | 75.6% |
| 1s68A01 | 3.30.1490.70 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › | 0.55 | 39.0 | 3.23e-01 | 78.6% | 71.1% |
| 3h1dA01 | 3.90.1750.10 | Alpha Beta › Alpha-Beta Complex › Hect, E3 ligase catalytic domain fold › Hect, E3 ligase catalytic domains | 0.53 | 43.0 | 3.15e-01 | 100.0% | 83.2% |
| 2dchX02 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.53 | 37.0 | 3.10e-01 | 78.6% | 74.8% |
| 2kskA00 | 3.30.30.10 | Alpha Beta › 2-Layer Sandwich › Defensin A-like › Knottin, scorpion toxin-like | 0.52 | 38.0 | 3.55e-01 | 78.6% | 64.8% |
| 7xinA03 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.52 | 36.0 | 2.99e-01 | 73.2% | 67.0% |
| 4e1oA03 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.52 | 35.0 | 3.01e-01 | 71.4% | 40.8% |
| 1ultB01 | 3.40.50.12780 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain | 0.51 | 42.0 | 2.55e-01 | 94.6% | 20.5% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1893705 | 223.3.1.8 ↗ | a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase2 | 0.62 | 41.0 | 4.50e-01 | 73.2% | 88.4% |
| 4817093 | 7502.1.1.0 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS | 0.60 | 44.0 | 4.60e-01 | 82.1% | 100.0% |
| 3469356 | 2005.1.1.3 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp | 0.59 | 42.0 | 3.18e-01 | 82.1% | 98.8% |
| 4014289 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.54 | 43.0 | 3.33e-01 | 100.0% | 55.6% |
| 4956722 | 327.11.1.7 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) › KH_NusA_2nd | 0.53 | 38.0 | 3.36e-01 | 80.4% | 82.8% |
| 4980205 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.53 | 43.0 | 3.07e-01 | 100.0% | 75.2% |
| 5008330 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.52 | 38.0 | 2.91e-01 | 94.6% | 29.7% |
| 3487112 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.52 | 43.0 | 2.58e-01 | 98.2% | 53.3% |
| 3629488 | 214.1.1.0 ↗ | a+b two layers › SH2 › SH2 › SH2 | 0.51 | 39.0 | 3.26e-01 | 89.3% | 55.7% |
| 3646297 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.50 | 39.0 | 2.81e-01 | 94.6% | 60.5% |