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IMGVR_UViG_650716053_000001-650716053-650872023

Arc-Vir

IMGVR_UViG_650716053_000001-650716053-650872023

Identity

Kingdom:
archaea

Quality

81.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 49-100
PDB
Domain cluster: representative
CATH (66)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3c12A01 2.30.30.910 Mainly Beta › Roll › SH3 type barrels. › 0.84 62.0 6.27e-01 94.2% 80.4%
3lx7A01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.81 64.0 6.73e-01 96.2% 95.7%
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.81 70.0 6.32e-01 100.0% 71.0%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.79 71.0 6.62e-01 100.0% 83.1%
5ygbA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.79 71.0 6.08e-01 100.0% 70.0%
2l89A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.79 70.0 5.47e-01 100.0% 58.3%
2budA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.79 67.0 5.52e-01 94.2% 62.0%
5kcoA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.75 61.0 5.86e-01 90.4% 81.4%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.73 63.0 5.62e-01 100.0% 68.5%
3j7aF03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.73 64.0 5.78e-01 100.0% 83.1%
1r4kA01 2.170.260.10 Mainly Beta › Beta Complex › paz domain › paz domain 0.73 64.0 4.76e-01 100.0% 65.9%
3obyA01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.72 60.0 4.79e-01 98.1% 52.3%
2eqmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.71 60.0 5.97e-01 94.2% 100.0%
2ldmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.71 56.0 5.66e-01 94.2% 88.7%
1m9sA03 2.30.30.170 Mainly Beta › Roll › SH3 type barrels. › 0.70 58.0 5.20e-01 94.2% 90.7%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 58.0 5.58e-01 98.1% 88.7%
4iupB01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.69 58.0 5.57e-01 98.1% 93.5%
2e12A00 2.30.30.720 Mainly Beta › Roll › SH3 type barrels. › Protein of unknown function (DUF3247) 0.69 56.0 4.78e-01 96.2% 69.9%
2fb7A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.68 58.0 5.08e-01 98.1% 90.0%
6mavB02 2.40.50.120 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.68 50.0 4.27e-01 80.8% 100.0%
4lduA03 2.30.30.1040 Mainly Beta › Roll › SH3 type barrels. › 0.67 56.0 5.15e-01 94.2% 94.1%
2ej9A02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.66 51.0 5.19e-01 94.2% 91.8%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.64 54.0 4.72e-01 98.1% 68.7%
1u1sA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.64 51.0 4.84e-01 98.1% 74.2%
4xtvB02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.64 50.0 5.16e-01 98.1% 97.9%
4a53A01 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.64 53.0 5.08e-01 96.2% 82.3%
4by6B00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.63 49.0 3.55e-01 90.4% 34.3%
1fouA02 2.40.500.10 Mainly Beta › Beta Barrel › Upper collar protein gp10 (connector protein) fold › Upper collar protein gp10 (connector protein) 0.63 53.0 4.03e-01 100.0% 76.5%
4f7uG00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.62 51.0 4.81e-01 98.1% 89.7%
1kq1H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.61 48.0 4.57e-01 96.2% 72.7%
1f39A00 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.61 53.0 4.29e-01 98.1% 50.5%
1xf1A02 3.50.30.30 Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › 0.61 50.0 3.73e-01 98.1% 82.4%
2w1zA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.60 48.0 3.64e-01 94.2% 69.5%
1io1A03 2.30.220.10 Mainly Beta › Roll › f41 fragment of flagellin, C-terminal domain › f41 fragment of flagellin, C-terminal domain 0.59 47.0 3.95e-01 90.4% 64.2%
4h75A00 2.80.10.70 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › Spindlin/Ssty 0.58 46.0 3.26e-01 96.2% 28.6%
3c6kA02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.58 43.0 4.26e-01 86.5% 87.5%
6psyA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.58 39.0 2.59e-01 71.2% 61.2%
2b2cA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.57 42.0 4.02e-01 82.7% 85.9%
2d9wA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 43.0 3.54e-01 88.5% 94.5%
3luuA00 3.30.2020.30 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › 0.56 43.0 3.76e-01 90.4% 82.0%
1uirA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.56 42.0 4.28e-01 88.5% 94.2%
3kxtA00 2.30.30.610 Mainly Beta › Roll › SH3 type barrels. › Chromatin protein Cren7 0.56 44.0 4.39e-01 92.3% 96.4%
6euaA01 3.90.215.10 Alpha Beta › Alpha-Beta Complex › Gamma Fibrinogen; Chain A, domain 1 › Gamma Fibrinogen, chain A, domain 1 0.55 41.0 3.00e-01 78.8% 87.1%
1inlC02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.55 41.0 3.99e-01 88.5% 82.8%
4kbxA01 2.40.37.30 Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › 0.55 44.0 2.93e-01 98.1% 21.0%
2ra2B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.55 43.0 4.28e-01 100.0% 94.8%
3b5mA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 46.0 3.62e-01 100.0% 94.1%
2k57A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.54 43.0 4.28e-01 100.0% 98.2%
3e4vA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 46.0 3.26e-01 100.0% 58.6%
3o4fC01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.54 43.0 4.34e-01 88.5% 98.0%
5jv4A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 41.0 3.10e-01 86.5% 86.6%
1iy9A02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.54 41.0 4.18e-01 88.5% 94.2%
2e5wA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.54 42.0 4.15e-01 88.5% 89.3%
2d5mA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 44.0 3.15e-01 100.0% 55.7%
1yloE02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.53 45.0 3.92e-01 100.0% 67.9%
2o07A01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.52 40.0 3.91e-01 88.5% 86.4%
2hlcA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.52 45.0 3.66e-01 100.0% 51.9%
2cmgA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.52 37.0 3.81e-01 82.7% 92.2%
3cp3A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 42.0 3.33e-01 100.0% 44.1%
2x8nA01 3.30.2020.40 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › Uncharacterised protein PF10387, DUF2442 0.51 41.0 3.39e-01 90.4% 76.3%
5xpyA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 39.0 3.31e-01 94.2% 63.9%
1ltlA03 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.51 40.0 4.06e-01 96.2% 95.9%
4r8tB02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.51 42.0 3.89e-01 100.0% 71.2%
4q8gA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.51 43.0 2.66e-01 98.1% 17.4%
3mb5A01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.50 43.0 4.15e-01 100.0% 93.5%
2lydA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 36.0 2.93e-01 86.5% 55.2%
ECOD (64)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3703449 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.85 78.0 6.82e-01 100.0% 94.7%
3612351 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.85 73.0 6.37e-01 94.2% 89.3%
3586487 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.81 68.0 5.67e-01 94.2% 55.3%
4025829 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.81 74.0 7.25e-01 100.0% 98.2%
3495447 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.81 71.0 5.37e-01 98.1% 47.5%
3488114 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.80 72.0 5.45e-01 100.0% 45.8%
648 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.79 67.0 5.60e-01 94.2% 64.8%
4000280 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.78 68.0 6.71e-01 98.1% 89.1%
3592766 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.78 69.0 5.00e-01 98.1% 53.6%
3741680 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.78 67.0 6.61e-01 96.2% 94.5%
3177842 4.1.1.18 beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.77 69.0 5.24e-01 100.0% 63.3%
5051313 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.77 68.0 6.33e-01 98.1% 86.2%
4020096 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.77 66.0 4.90e-01 100.0% 55.0%
4152374 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.76 65.0 5.56e-01 96.2% 77.4%
4480519 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.76 68.0 6.47e-01 100.0% 91.7%
4425420 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.75 64.0 5.46e-01 96.2% 75.3%
4642857 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.75 64.0 5.55e-01 96.2% 80.0%
3247995 4.1.1.33 beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.74 64.0 5.73e-01 94.2% 70.0%
3490245 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.74 64.0 5.32e-01 98.1% 80.0%
3504834 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 64.0 6.20e-01 100.0% 86.2%
4994895 4.15.1.2 beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 0.73 61.0 5.36e-01 96.2% 76.2%
3563220 4.1.1.220 beta barrels › SH3 › SH3 › SH3 › BAHCC1-like_Tudor 0.73 64.0 5.54e-01 98.1% 71.2%
3510676 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.72 64.0 5.20e-01 100.0% 53.7%
3660358 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 64.0 6.09e-01 100.0% 91.7%
3597248 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 60.0 5.01e-01 100.0% 98.9%
3510029 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.69 59.0 5.60e-01 92.3% 100.0%
3911348 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 61.0 4.52e-01 98.1% 89.2%
5024617 4.15.1.2 beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 0.69 58.0 4.88e-01 98.1% 67.4%
3888349 4.1.1.12 beta barrels › SH3 › SH3 › SH3 › PWWP 0.68 61.0 4.51e-01 100.0% 41.5%
3549369 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.68 55.0 5.31e-01 90.4% 96.7%
4999741 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 57.0 5.06e-01 100.0% 71.2%
2557227 4.7.1.2 beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › ROF 0.67 56.0 5.01e-01 100.0% 77.9%
3769507 4.1.1.31 beta barrels › SH3 › SH3 › SH3 › Spin-Ssty 0.65 55.0 4.97e-01 94.2% 72.9%
3215092 2.1.1.235 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF26704 0.65 50.0 4.40e-01 86.5% 96.2%
4058174 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.65 54.0 5.10e-01 96.2% 76.9%
3625817 4.1.1.219 beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.65 54.0 4.78e-01 98.1% 72.5%
3226827 4.1.1.133 beta barrels › SH3 › SH3 › SH3 › SMN_YG-box 0.64 54.0 4.43e-01 100.0% 52.4%
3774692 4.1.1.31 beta barrels › SH3 › SH3 › SH3 › Spin-Ssty 0.64 54.0 4.74e-01 98.1% 77.5%
4016285 4.1.1.185 beta barrels › SH3 › SH3 › SH3 › DUF2196 0.63 53.0 5.02e-01 98.1% 81.5%
3790520 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.63 45.0 3.76e-01 78.8% 75.8%
3758536 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 51.0 4.68e-01 94.2% 80.0%
3401930 220.1.1.125 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_PLEKHM2 0.61 45.0 3.41e-01 82.7% 40.0%
3994170 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.60 47.0 3.23e-01 88.5% 27.1%
3282756 1.1.5.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.59 52.0 3.88e-01 100.0% 51.1%
4979291 4.17.1.1 beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.59 50.0 4.48e-01 98.1% 73.3%
3913637 4.1.1.31 beta barrels › SH3 › SH3 › SH3 › Spin-Ssty 0.58 46.0 4.06e-01 98.1% 68.9%
3989019 1.1.7.19 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 0.58 51.0 4.03e-01 100.0% 53.6%
3785832 3792.1.1.2 beta sandwiches › 26S proteasome subunit Rpn2 C-terminal domain › 26S proteasome subunit Rpn2 C-terminal domain › 26S proteasome subunit Rpn2 C-terminal domain › APC1_3rd 0.58 41.0 3.50e-01 100.0% 44.4%
3222570 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 44.0 3.61e-01 90.4% 64.3%
5078875 2003.1.5.13 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Spermine_synth 0.56 42.0 2.67e-01 86.5% 15.9%
1030876 3699.1.1.1 beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N 0.55 42.0 3.91e-01 88.5% 72.9%
3722313 11.9.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › FAH › FAH › FAA_hydrolase 0.55 46.0 2.97e-01 100.0% 84.9%
3785886 1.1.5.18 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › FMN_bind_2 0.55 42.0 2.95e-01 90.4% 72.7%
3229763 267.1.1.3 a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase 0.54 41.0 2.69e-01 82.7% 19.2%
3437430 3699.1.1.1 beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N 0.54 42.0 3.97e-01 88.5% 75.4%
4032992 11.1.5.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.54 36.0 2.95e-01 71.2% 94.5%
4163458 3699.1.1.1 beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N 0.54 41.0 4.13e-01 88.5% 89.1%
3979842 4.1.1.45 beta barrels › SH3 › SH3 › SH3 › DUF903 0.53 42.0 4.20e-01 98.1% 96.4%
5032977 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.52 45.0 3.99e-01 100.0% 83.7%
3495848 5.1.4.12 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Sema 0.52 41.0 2.39e-01 88.5% 95.7%
3927520 3699.1.1.1 beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N 0.52 39.0 3.40e-01 88.5% 85.6%
3283078 1.1.5.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.51 43.0 3.19e-01 100.0% 43.6%
990993 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.51 38.0 3.84e-01 90.4% 100.0%
3633279 1.1.1.0 beta barrels › cradle loop barrel › RIFT-related › acid protease 0.50 35.0 2.65e-01 100.0% 26.9%