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IMGVR_UViG_650716053_000001-650716053-650872032

Arc-Vir

Identity

Accession:: IMGVR_UViG_650716053_000001-650716053-650872032 ↗
Kingdom:: archaea

Quality

86.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-95_162-182

PDB

Domain cluster: representative

CATH (21)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2bvlA01	1.20.58.1190	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.68	47.0	5.31e-01	94.8%	95.3%
3gm8A04	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.64	26.0	3.11e-01	100.0%	52.6%
1v8hA00	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.64	28.0	2.96e-01	100.0%	44.3%
5figA00	1.20.1270.360	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 ›	0.62	50.0	5.32e-01	91.4%	99.0%
2mtqA00	1.20.58.130	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.61	37.0	4.47e-01	70.7%	95.9%
2ddhA01	1.10.540.10	Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain	0.61	36.0	3.61e-01	76.7%	56.8%
3tp4B02	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.61	28.0	3.17e-01	100.0%	54.8%
2j1dG01	1.20.58.2220	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Formin, FH2 domain	0.60	41.0	2.88e-01	70.7%	62.2%
2pkaA00	2.40.10.10	Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases	0.60	25.0	2.93e-01	100.0%	52.5%
2rldA00	1.20.1440.60	Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence	0.59	49.0	4.94e-01	89.7%	97.4%
3csvA02	3.90.1200.10	Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe	0.57	49.0	3.97e-01	96.6%	77.9%
4nbqB02	1.10.10.400	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain	0.55	33.0	3.83e-01	85.3%	82.9%
1iq0A03	1.10.730.10	Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1	0.55	41.0	4.12e-01	77.6%	81.9%
8an5A01	3.30.460.40	Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 ›	0.54	38.0	3.25e-01	74.1%	64.1%
2pqrA01	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.53	36.0	4.01e-01	88.8%	87.1%
1oqyA03	1.10.10.540	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › XPC-binding domain	0.53	28.0	3.62e-01	94.8%	100.0%
1q2lA04	3.30.830.10	Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like	0.52	46.0	3.78e-01	100.0%	93.0%
2v40A02	1.10.300.10	Mainly Alpha › Orthogonal Bundle › Adenylosuccinate Synthetase, subunit A; domain 2 › Adenylosuccinate Synthetase, subunit A, domain 2	0.52	36.0	4.01e-01	97.4%	94.3%
2mx8A01	1.10.274.70	Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, N-terminal domain	0.51	38.0	3.87e-01	77.6%	100.0%
1rh5A00	1.10.3370.10	Mainly Alpha › Orthogonal Bundle › Preprotein translocase SecY subunit › SecY subunit domain	0.51	46.0	3.15e-01	100.0%	80.2%
4gb7A00	3.40.710.10	Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily	0.50	41.0	2.97e-01	93.1%	86.3%

ECOD (16)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3428914	650.1.1.1 ↗	alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ	0.65	32.0	4.36e-01	90.5%	98.2%
3380775	650.1.1.10 ↗	alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › PF30912	0.64	31.0	4.31e-01	91.4%	98.2%
3939282	650.1.1.10 ↗	alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › PF30912	0.59	33.0	3.95e-01	95.7%	82.7%
4460903	101.11.1.1 ↗	alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase	0.58	34.0	3.84e-01	84.5%	75.6%
4996547	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.57	41.0	3.74e-01	75.0%	63.2%
4637753	626.1.1.0 ↗	alpha complex topology › Formin homology 2 domain (FH2 domain) › Formin homology 2 domain (FH2 domain) › Formin homology 2 domain (FH2 domain)	0.54	45.0	2.69e-01	89.7%	43.9%
3591149	3543.1.1.1 ↗	alpha complex topology › Acid-activated urea channel › Acid-activated urea channel › Acid-activated urea channel › Gpr1_Fun34_YaaH	0.54	47.0	4.00e-01	96.6%	73.8%
3506491	101.11.1.1 ↗	alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase	0.54	35.0	3.79e-01	87.1%	76.0%
3190602	3543.1.1.1 ↗	alpha complex topology › Acid-activated urea channel › Acid-activated urea channel › Acid-activated urea channel › Gpr1_Fun34_YaaH	0.54	47.0	4.00e-01	96.6%	79.0%
3695888	3543.1.1.1 ↗	alpha complex topology › Acid-activated urea channel › Acid-activated urea channel › Acid-activated urea channel › Gpr1_Fun34_YaaH	0.54	47.0	3.97e-01	96.6%	78.5%
3637212	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.53	41.0	3.56e-01	81.9%	87.4%
3687436	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.53	45.0	3.59e-01	93.1%	98.7%
3762788	226.1.1.4 ↗	a+b two layers › POZ domain › POZ domain › POZ domain › BTB_2	0.51	36.0	3.68e-01	78.4%	75.5%
3689148	604.6.1.0 ↗	alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain	0.51	43.0	3.43e-01	94.8%	74.4%
4092432	101.11.1.1 ↗	alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase	0.50	33.0	3.63e-01	87.9%	82.1%
5053066	192.7.1.0 ↗	alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm	0.50	40.0	3.20e-01	85.3%	96.6%

D2 medium residues 96-161

PDB

Domain cluster: representative

CATH (17)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5i0hA02	1.20.5.4820	Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces ›	0.69	50.0	4.86e-01	75.8%	98.6%
6ui4A03	1.20.5.4820	Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces ›	0.66	47.0	4.38e-01	75.8%	87.2%
2mysA06	1.20.5.4820	Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces ›	0.65	44.0	3.62e-01	71.2%	50.4%
5cemA01	3.30.200.20	Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1	0.63	41.0	4.01e-01	87.9%	60.3%
6i7dB01	6.20.240.20	Special › Other non-globular › Alpha-Beta Plaits ›	0.61	43.0	4.58e-01	74.2%	96.6%
2uv8A06	3.30.70.2490	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.60	40.0	4.03e-01	80.3%	68.7%
4anjA06	1.20.5.4820	Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces ›	0.56	39.0	3.38e-01	75.8%	60.2%
2ebbA00	3.30.1360.20	Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Transcriptional coactivator/pterin dehydratase	0.55	39.0	3.57e-01	78.8%	75.0%
1r0vA02	3.40.1170.20	Alpha Beta › 3-Layer(aba) Sandwich › MutS, DNA mismatch repair protein, domain I › tRNA intron endonuclease, N-terminal domain	0.53	42.0	4.09e-01	95.5%	77.3%
3lwsF02	3.90.1150.10	Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1	0.52	37.0	3.29e-01	77.3%	82.7%
1bm8A00	3.10.260.10	Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › Transcription regulator HTH, APSES-type DNA-binding domain	0.52	41.0	3.76e-01	95.5%	71.7%
5wt3A01	3.30.70.2580	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.52	38.0	3.88e-01	89.4%	84.6%
3qyfA03	1.10.10.1690	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Uncharacterised CRISPR-associated protein family, UPF0236	0.52	36.0	3.70e-01	77.3%	78.7%
3l4gB03	3.30.56.10	Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 ›	0.52	38.0	3.69e-01	78.8%	77.0%
2k3iA01	3.30.70.860	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.51	39.0	3.74e-01	90.9%	92.9%
2jmlA00	1.10.1660.10	Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 ›	0.51	35.0	3.39e-01	75.8%	69.1%
2zyzB01	3.40.1170.20	Alpha Beta › 3-Layer(aba) Sandwich › MutS, DNA mismatch repair protein, domain I › tRNA intron endonuclease, N-terminal domain	0.50	41.0	3.81e-01	95.5%	88.6%

ECOD (31)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3285283	101.1.9.0 ↗	alpha arrays › HTH › HTH › Putative DNA-binding domain	0.69	49.0	3.61e-01	74.2%	33.3%
4948478	327.11.2.0 ↗	a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I)	0.66	47.0	4.78e-01	75.8%	89.1%
5059195	304.24.1.0 ↗	a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like	0.62	42.0	4.40e-01	93.9%	76.7%
4943600	304.24.1.42 ↗	a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › TYW2_N_2	0.61	43.0	4.28e-01	95.5%	70.0%
5043257	304.24.1.5 ↗	a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › Trm5_N	0.60	41.0	4.13e-01	78.8%	70.8%
3195155	327.11.2.0 ↗	a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I)	0.59	42.0	4.19e-01	77.3%	91.4%
1790206	242.1.1.1 ↗	a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1	0.59	49.0	4.04e-01	100.0%	86.7%
5054613	304.24.1.5 ↗	a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › Trm5_N	0.59	40.0	4.28e-01	95.5%	85.5%
3959648	3601.1.1.0 ↗	alpha complex topology › Class III adenylyl cyclases regulatory domain › Class III adenylyl cyclases regulatory domain › Class III adenylyl cyclases regulatory domain	0.58	41.0	3.18e-01	75.8%	34.4%
3627396	4964.1.1.4 ↗	alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › Surp	0.57	46.0	3.36e-01	93.9%	42.9%
3602519	4323.1.1.0 ↗	alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C	0.56	45.0	4.07e-01	90.9%	85.3%
5042680	304.24.1.5 ↗	a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › Trm5_N	0.55	40.0	4.19e-01	89.4%	90.0%
5083053	304.24.1.5 ↗	a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › Trm5_N	0.55	39.0	4.19e-01	89.4%	94.5%
4994750	304.24.1.5 ↗	a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › Trm5_N	0.54	41.0	4.20e-01	87.9%	93.3%
1890394	304.24.1.5 ↗	a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › Trm5_N	0.54	41.0	4.16e-01	93.9%	83.1%
4072263	327.19.1.1 ↗	a+b two layers › Alpha-lytic protease prodomain-like › DNA mismatch repair protein MutL regulatory subdomain › DNA mismatch repair protein MutL regulatory subdomain › MutL_C	0.53	38.0	3.51e-01	95.5%	57.8%
5062189	304.24.1.5 ↗	a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › Trm5_N	0.53	41.0	4.02e-01	89.4%	86.7%
4516101	4354.1.1.1 ↗	a+b two layers › TRCF domain › TRCF domain › TRCF domain › TRCF	0.52	37.0	2.95e-01	75.8%	94.7%
3244573	242.2.1.0 ↗	a+b two layers › Homing endonucleases-like › tRNA-intron endonuclease N-terminal domain-like › tRNA-intron endonuclease N-terminal domain-like	0.52	41.0	3.81e-01	90.9%	91.1%
4974273	3501.1.1.0 ↗	a+b two layers › protein PCC1 › protein PCC1 › protein PCC1	0.52	37.0	3.68e-01	93.9%	71.4%
4940185	316.1.1.0 ↗	a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase	0.52	39.0	3.28e-01	86.4%	85.4%
4965407	304.8.1.10 ↗	a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_7	0.52	38.0	3.91e-01	78.8%	93.3%
4933713	304.8.1.10 ↗	a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_7	0.52	37.0	3.80e-01	77.3%	86.2%
5039814	304.24.1.0 ↗	a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like	0.52	39.0	4.02e-01	89.4%	86.2%
5075549	304.24.1.5 ↗	a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › Trm5_N	0.52	40.0	3.97e-01	89.4%	91.4%
5025304	304.24.1.5 ↗	a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › Trm5_N	0.51	38.0	3.87e-01	89.4%	83.1%
4958396	304.24.1.5 ↗	a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › Trm5_N	0.51	39.0	3.86e-01	89.4%	80.0%
5023633	304.24.1.5 ↗	a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › Trm5_N	0.51	40.0	3.96e-01	89.4%	87.1%
4987783	304.24.1.5 ↗	a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › Trm5_N	0.51	38.0	3.93e-01	89.4%	93.3%
4940610	304.8.1.10 ↗	a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_7	0.51	36.0	3.78e-01	77.3%	93.3%
4162516	304.24.1.0 ↗	a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like	0.50	42.0	3.63e-01	93.9%	70.5%