←Back to structures

IMGVR_UViG_650716054_000001-650716054-650798094

Arc-Vir

IMGVR_UViG_650716054_000001-650716054-650798094

Identity

Kingdom:
archaea

Quality

80.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 21-88
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04434.23 best SWIM 20.8 3.00e-04 51.5% 44.7%
CATH (32)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1yn8A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 32.0 3.39e-01 73.5% 52.5%
6heiA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.62 45.0 2.86e-01 76.5% 49.2%
3ms6A00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.60 41.0 3.73e-01 70.6% 71.1%
1y4oA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.60 40.0 3.53e-01 70.6% 66.3%
4hs5A00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.59 45.0 3.96e-01 82.4% 67.6%
3ef2A02 3.30.460.70 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › 0.58 42.0 3.35e-01 76.5% 87.7%
4jpdA00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.58 43.0 3.76e-01 82.4% 67.9%
3k44B00 3.30.2450.30 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.58 40.0 3.21e-01 73.5% 47.1%
2nn5A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.57 40.0 3.08e-01 75.0% 56.1%
1o9aA01 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.56 34.0 3.92e-01 100.0% 90.9%
2ckkA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 30.0 3.33e-01 72.1% 60.4%
2ea9A01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.56 38.0 3.47e-01 70.6% 86.2%
1nyeA00 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.56 38.0 2.98e-01 70.6% 55.9%
2re3A02 2.30.270.10 Mainly Beta › Roll › duf1285 protein fold › duf1285 protein 0.56 39.0 3.90e-01 73.5% 92.9%
1zuyA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 30.0 3.17e-01 70.6% 53.4%
1jyaB00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.55 47.0 3.92e-01 95.6% 70.2%
1j3wC00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.55 47.0 3.82e-01 97.1% 66.2%
7wffb01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.55 41.0 2.78e-01 85.3% 96.7%
6h5bB01 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.54 47.0 3.90e-01 97.1% 71.4%
1y5oA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 38.0 3.23e-01 73.5% 79.1%
1gc5A01 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.54 47.0 3.00e-01 100.0% 35.0%
2zylA01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.54 43.0 3.47e-01 88.2% 64.4%
6jhpA01 2.70.98.60 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › alpha-galactosidase from lactobacil brevis 0.54 42.0 2.88e-01 91.2% 94.9%
3d89A00 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.53 42.0 3.42e-01 88.2% 87.5%
3kyeA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.53 46.0 3.80e-01 97.1% 71.4%
4xpmB00 3.40.1840.10 Alpha Beta › 3-Layer(aba) Sandwich › Profilin-like › YNR034W-A-like 0.52 35.0 3.59e-01 70.6% 85.1%
1vr8A00 3.40.1000.20 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › TM1622-like 0.52 42.0 3.41e-01 97.1% 45.9%
1px5A01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.51 36.0 2.92e-01 75.0% 67.1%
2gsbA01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.51 41.0 3.88e-01 91.2% 76.2%
5x6vF00 3.30.450.190 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.51 42.0 3.63e-01 97.1% 69.5%
2kc8A00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.51 34.0 3.11e-01 70.6% 82.1%
7yh1A01 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.50 43.0 3.70e-01 98.5% 73.7%
ECOD (72)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3592234 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.62 42.0 3.64e-01 70.6% 68.2%
3414531 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.62 42.0 3.79e-01 70.6% 72.6%
3698579 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.62 42.0 3.61e-01 70.6% 68.2%
3981185 241.1.1.25 ↗ a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › PF27378 0.62 45.0 3.80e-01 77.9% 77.4%
3270840 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.61 41.0 3.80e-01 70.6% 76.7%
3986751 3197.1.1.0 ↗ a+b two layers › N-terminal domain of effector protein PipB2 › N-terminal domain of effector protein PipB2 › N-terminal domain of effector protein PipB2 0.61 43.0 3.63e-01 73.5% 70.9%
4944343 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.61 41.0 3.72e-01 70.6% 74.5%
3387446 7579.1.1.60 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › DUF2920 0.61 41.0 2.55e-01 70.6% 58.4%
4890947 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.60 41.0 3.48e-01 70.6% 64.3%
3701440 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.60 40.0 3.71e-01 70.6% 77.8%
3479048 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.60 40.0 3.71e-01 70.6% 76.7%
4000746 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.60 40.0 3.73e-01 70.6% 78.7%
3599007 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.59 40.0 3.57e-01 70.6% 72.0%
3937820 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.59 40.0 3.77e-01 70.6% 80.0%
3401904 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.59 40.0 3.44e-01 70.6% 62.7%
3513247 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.59 40.0 3.60e-01 70.6% 72.6%
2779090 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.59 40.0 3.59e-01 70.6% 72.9%
4998154 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.58 46.0 3.78e-01 91.2% 92.6%
3989333 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.57 36.0 3.76e-01 75.0% 71.7%
4945195 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.56 47.0 4.03e-01 95.6% 68.7%
5071935 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.56 48.0 3.92e-01 97.1% 90.0%
4369844 286.1.1.1 ↗ a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase 0.56 38.0 2.95e-01 70.6% 93.1%
4945318 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.55 42.0 3.59e-01 85.3% 90.4%
4972261 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.54 47.0 3.78e-01 97.1% 62.2%
4002901 223.2.1.12 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › MAPKK1_Int 0.54 47.0 3.69e-01 95.6% 57.9%
4028321 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.54 44.0 3.32e-01 92.6% 65.4%
4945992 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.54 46.0 3.75e-01 95.6% 64.3%
3223489 223.2.1.7 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › SRP-alpha_N 0.54 45.0 3.74e-01 97.1% 93.1%
3965700 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.54 46.0 3.87e-01 97.1% 70.6%
4943458 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.54 46.0 3.77e-01 97.1% 64.6%
3283568 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.54 45.0 3.71e-01 94.1% 68.0%
3286086 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.53 46.0 3.75e-01 97.1% 66.9%
5044707 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.53 46.0 3.79e-01 97.1% 67.2%
3281830 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.53 46.0 3.69e-01 97.1% 63.0%
4991121 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 46.0 3.88e-01 97.1% 74.8%
3602995 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.53 45.0 3.76e-01 94.1% 67.0%
4948154 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 45.0 3.72e-01 97.1% 67.2%
4957253 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.53 45.0 3.74e-01 97.1% 68.3%
4975639 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 46.0 3.75e-01 98.5% 66.9%
4964955 223.2.1.63 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › DUF7522 0.53 40.0 3.30e-01 100.0% 44.2%
5052370 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 44.0 3.79e-01 94.1% 73.6%
5032395 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 45.0 3.74e-01 98.5% 61.6%
5040798 324.1.1.1 ↗ a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC 0.52 36.0 3.22e-01 72.1% 84.8%
5045489 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.52 43.0 3.57e-01 94.1% 68.2%
3827261 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 41.0 3.42e-01 89.7% 86.9%
5022728 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.52 45.0 3.80e-01 97.1% 73.0%
5040627 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.52 45.0 3.68e-01 98.5% 66.2%
5078870 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.52 44.0 3.55e-01 97.1% 61.4%
5049691 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 46.0 4.06e-01 100.0% 75.0%
5050494 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.52 45.0 3.63e-01 97.1% 63.8%
5027564 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 44.0 3.47e-01 97.1% 59.3%
4979423 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 44.0 3.57e-01 97.1% 62.2%
4927372 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 43.0 3.66e-01 94.1% 77.4%
4971503 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.51 43.0 3.56e-01 95.6% 65.6%
3825338 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 41.0 3.37e-01 91.2% 83.0%
5076907 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 45.0 3.62e-01 100.0% 63.0%
5049690 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 42.0 3.40e-01 94.1% 62.1%
3058519 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.51 44.0 3.73e-01 98.5% 72.4%
4960515 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.51 45.0 3.79e-01 100.0% 67.0%
3924796 223.2.1.12 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › MAPKK1_Int 0.51 43.0 3.66e-01 95.6% 67.0%
3694428 2003.1.2.15 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.51 44.0 2.73e-01 100.0% 25.2%
5016233 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 43.0 3.77e-01 98.5% 70.4%
5048715 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 45.0 3.53e-01 100.0% 60.0%
3728783 223.2.1.15 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Longin 0.51 43.0 3.48e-01 98.5% 76.4%
279006 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.51 32.0 3.21e-01 95.6% 62.3%
5050074 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.50 43.0 3.47e-01 97.1% 63.7%
3658352 223.2.1.15 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Longin 0.50 41.0 3.43e-01 97.1% 80.0%
4928263 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.50 44.0 3.77e-01 98.5% 81.8%
3603559 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.50 44.0 3.79e-01 100.0% 74.5%
3834262 223.2.1.15 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Longin 0.50 43.0 3.44e-01 97.1% 78.6%
5074161 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.50 44.0 3.60e-01 100.0% 61.2%
4440297 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.50 44.0 3.50e-01 100.0% 60.7%