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IMGVR_UViG_650716054_000001-650716054-650798108

Arc-Vir

IMGVR_UViG_650716054_000001-650716054-650798108

Identity

Kingdom:
archaea

Quality

81.9 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 17-95
PDB
Domain cluster: representative
CATH (42)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4xcgA02 3.30.260.10 Alpha Beta › 2-Layer Sandwich › GROEL; domain 2 › TCP-1-like chaperonin intermediate domain 0.73 61.0 5.41e-01 92.4% 99.1%
4oydB00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.68 47.0 4.15e-01 72.2% 93.2%
5kbwB00 1.10.1760.20 Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › 0.67 58.0 4.54e-01 96.2% 95.9%
4g84A01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.66 59.0 3.87e-01 100.0% 32.1%
2x2vA00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.66 42.0 4.51e-01 100.0% 76.5%
2e9xA01 1.20.58.1030 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.65 43.0 3.66e-01 72.2% 41.4%
2wv2A00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.64 55.0 3.49e-01 100.0% 62.5%
4e6nA02 6.10.140.1010 Special › Helix non-globular › Helix Hairpins › 0.63 39.0 4.24e-01 96.2% 74.2%
4v1gA00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.62 40.0 3.99e-01 100.0% 61.2%
3l1nA01 6.10.140.790 Special › Helix non-globular › Helix Hairpins › 0.62 35.0 4.18e-01 96.2% 86.3%
2js5A00 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.62 43.0 4.52e-01 96.2% 80.3%
4nb5B02 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.62 41.0 4.49e-01 96.2% 84.4%
1urfA00 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.62 43.0 4.34e-01 94.9% 71.6%
3nbxX03 1.20.58.1510 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.61 43.0 4.02e-01 74.7% 92.1%
3d36B02 1.10.287.130 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain 0.61 40.0 4.49e-01 96.2% 88.5%
2mpnA00 6.10.140.1340 Special › Helix non-globular › Helix Hairpins › 0.60 41.0 4.40e-01 96.2% 82.4%
1u5pA01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.60 43.0 3.91e-01 75.9% 90.7%
3favD00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.59 46.0 4.71e-01 100.0% 84.6%
3vayA02 1.20.120.1600 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.59 47.0 4.65e-01 92.4% 100.0%
4egwA02 1.20.58.340 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region 0.58 42.0 3.68e-01 75.9% 88.2%
3hmfA00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.58 50.0 4.44e-01 97.5% 94.0%
1i6zA00 1.20.58.120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain 0.58 39.0 3.34e-01 100.0% 41.5%
3iu5A00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.58 50.0 4.43e-01 96.2% 95.6%
3phuA01 3.90.70.80 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.58 39.0 3.15e-01 94.9% 34.6%
3pe0A02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.58 41.0 3.73e-01 74.7% 90.6%
1zvzA02 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.57 39.0 3.43e-01 70.9% 66.1%
2p67A01 1.20.5.170 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.57 31.0 3.71e-01 83.5% 80.8%
3axjB01 1.20.58.190 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 1 0.57 39.0 3.17e-01 96.2% 36.8%
7p3rA01 1.20.1170.10 Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; › 0.56 46.0 3.07e-01 91.1% 80.3%
2clbA01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.55 43.0 3.49e-01 84.8% 81.1%
7zxkC01 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.55 45.0 3.68e-01 91.1% 74.0%
5ulcX00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.54 45.0 3.98e-01 96.2% 84.4%
5g5gB02 3.30.390.50 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain 0.54 43.0 4.11e-01 89.9% 98.9%
2rbdA01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.54 44.0 3.58e-01 89.9% 74.0%
3bvxA02 1.20.1270.50 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Glycoside hydrolase family 38, central domain 0.53 46.0 4.12e-01 100.0% 67.6%
2ot4A03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.53 45.0 4.07e-01 97.5% 69.2%
4abmD00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.52 42.0 4.31e-01 94.9% 89.6%
3bxjA02 1.10.506.20 Mainly Alpha › Orthogonal Bundle › GTPase Activation - p120GAP; domain 1 › 0.52 38.0 3.64e-01 79.7% 100.0%
4aflA00 6.10.140.1740 Special › Helix non-globular › Helix Hairpins › 0.52 44.0 4.04e-01 96.2% 70.6%
6xz3A01 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.52 44.0 3.80e-01 89.9% 66.7%
3m9vA03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.51 47.0 3.73e-01 100.0% 58.0%
4ioeA00 1.10.287.850 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain 0.51 44.0 4.30e-01 97.5% 85.1%
ECOD (42)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3620214 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.72 64.0 6.02e-01 100.0% 82.1%
3284487 149.1.1.1 alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 0.72 62.0 3.87e-01 97.5% 31.2%
3222373 605.4.1.18 alpha duplicates or obligate multimers › ROP-like › ROP protein › ROP protein › PF29357 0.69 44.0 4.31e-01 92.4% 60.0%
4024301 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.67 53.0 5.00e-01 86.1% 73.7%
3866856 11.1.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.66 57.0 3.92e-01 98.7% 29.3%
3483536 5059.1.1.0 alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter 0.65 45.0 3.94e-01 100.0% 47.5%
4928457 314.1.1.9 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_His 0.65 57.0 3.85e-01 100.0% 33.9%
3761203 529.1.1.0 few secondary structure elements › Anaphylotoxins (complement system) › Anaphylotoxins (complement system) › Anaphylotoxins (complement system) 0.64 54.0 5.01e-01 96.2% 84.8%
3988293 5050.1.1.0 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.64 46.0 3.51e-01 75.9% 82.1%
5068844 601.1.1.0 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin 0.64 43.0 4.05e-01 97.5% 56.8%
3855780 604.1.1.66 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin_1st_PEPL 0.62 43.0 3.84e-01 72.2% 82.6%
3619687 604.1.1.127 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › EMC4 0.62 44.0 4.01e-01 75.9% 82.7%
5057208 632.15.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Staphylococcal complement inhibitor (SCIN) › Staphylococcal complement inhibitor (SCIN) 0.61 42.0 3.91e-01 97.5% 56.0%
4000657 604.6.1.22 alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › EMC4 0.61 44.0 3.79e-01 75.9% 72.8%
4467968 605.4.1.0 alpha duplicates or obligate multimers › ROP-like › ROP protein › ROP protein 0.61 42.0 3.64e-01 96.2% 46.7%
3498895 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.60 44.0 3.57e-01 75.9% 61.4%
3347379 3470.1.1.26 extended segments › Glycophorin-A transmembrane domain › Glycophorin-A transmembrane domain › Glycophorin-A transmembrane domain › DUF543 0.60 41.0 4.45e-01 100.0% 86.2%
5035480 159.1.2.4 alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › MazG-like 0.60 41.0 3.68e-01 96.2% 50.9%
2832675 2006.1.4.8 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN_5 0.59 40.0 3.02e-01 100.0% 27.3%
4276746 192.1.1.40 alpha bundles › Long alpha-hairpin › GreA transcript cleavage protein, N-terminal domain › GreA transcript cleavage protein, N-terminal domain › VMA21 0.58 42.0 4.44e-01 100.0% 88.2%
4991684 2004.1.1.76 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF87 0.57 48.0 3.43e-01 100.0% 29.8%
3377889 632.1.1.31 alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain › TB2_DP1_HVA22 0.57 37.0 3.39e-01 97.5% 49.5%
2507077 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.57 44.0 3.37e-01 82.3% 79.9%
3723027 601.1.1.0 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin 0.56 47.0 3.70e-01 97.5% 47.6%
3388607 603.1.1.105 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF31021 0.56 43.0 3.95e-01 94.9% 64.0%
3992612 604.6.1.1 alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › GAT 0.56 38.0 3.68e-01 96.2% 62.2%
5032963 5069.1.1.0 alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes 0.55 41.0 3.29e-01 91.1% 39.4%
3586382 601.1.2.4 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › Talin_R4 0.55 39.0 3.68e-01 96.2% 60.0%
5009781 131.1.1.0 alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like 0.55 47.0 4.16e-01 97.5% 88.3%
3981539 532.2.1.1 alpha arrays › Type III secretion system domain-like › Type III secretion system domains › Type III secretion system domains › HrpJ 0.55 38.0 3.84e-01 73.4% 73.8%
3572425 604.6.1.0 alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain 0.55 36.0 3.79e-01 89.9% 75.7%
3313262 633.4.1.1 alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor › PMEI 0.54 41.0 3.80e-01 83.5% 100.0%
3186154 622.1.1.7 alpha bundles › YvfG-like › HSC20 (HSCB), C-terminal oligomerisation domain › HSC20 (HSCB), C-terminal oligomerisation domain › DUF7607 0.54 38.0 3.47e-01 75.9% 95.5%
4011171 192.15.1.126 alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › DUF7607 0.53 38.0 3.39e-01 74.7% 93.0%
3592661 192.4.1.0 alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) 0.53 44.0 4.15e-01 89.9% 74.7%
4956714 3567.1.1.0 a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer 0.52 43.0 4.05e-01 100.0% 74.7%
4942389 604.6.1.0 alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain 0.52 42.0 4.00e-01 96.2% 73.1%
4969464 604.5.1.0 alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) 0.52 44.0 4.26e-01 92.4% 81.1%
4010296 632.1.1.3 alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain › Alpha-mann_mid 0.52 45.0 4.15e-01 98.7% 75.0%
3924740 622.1.1.1 alpha bundles › YvfG-like › HSC20 (HSCB), C-terminal oligomerisation domain › HSC20 (HSCB), C-terminal oligomerisation domain › HSCB_C 0.52 38.0 3.78e-01 77.2% 95.3%
3755341 133.1.1.1 alpha bundles › DH domain-like › DBL homology domain (DH-domain) › DBL homology domain (DH-domain) › RhoGEF 0.52 38.0 2.98e-01 83.5% 75.7%
3168355 2485.1.1.17 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › OST3_OST6 0.52 46.0 3.92e-01 100.0% 78.5%
D2 high residues 98-149
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04233.20 best Phage_Mu_F 45.5 1.60e-11 96.2% 43.8%
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4oebA00 2.60.270.50 Mainly Beta › Sandwich › Mutm (Fpg) Protein; Chain: A, domain 2 › 0.58 50.0 3.78e-01 100.0% 48.1%
5v7qZ00 3.30.1390.20 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L30; Chain: A, › Ribosomal protein L30/L7 0.55 46.0 4.50e-01 100.0% 98.3%
1ihmB01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.54 45.0 3.09e-01 100.0% 54.5%
4it4E01 2.40.30.320 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.53 43.0 3.54e-01 100.0% 73.7%
5eokA01 3.50.4.10 Alpha Beta › 3-Layer(bba) Sandwich › Hepatocyte Growth Factor › Hepatocyte Growth Factor 0.52 45.0 3.84e-01 100.0% 89.9%
2y26A01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.51 41.0 2.61e-01 100.0% 31.9%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3964369 6108.1.1.8 alpha bundles › Middle and GTPase effector domains in dynamin-related proteins › Middle and GTPase effector domains in dynamin-related proteins › Middle and GTPase effector domains in dynamin-related proteins › Phage_Mu_F 0.91 84.0 5.22e-01 100.0% 21.2%
4032640 601.19.1.3 alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › Phage_Mu_F 0.86 80.0 4.77e-01 100.0% 17.1%
3946757 601.19.1.3 alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › Phage_Mu_F 0.75 65.0 4.25e-01 100.0% 24.4%
4208181 4.1.1.70 beta barrels › SH3 › SH3 › SH3 › Tsr0524-like 0.55 47.0 4.41e-01 100.0% 95.4%
3740172 11.1.1.378 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Rgp1 0.54 41.0 3.21e-01 88.5% 100.0%
3427944 2004.1.1.36 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Dynamin_N 0.53 44.0 2.75e-01 100.0% 16.4%