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IMGVR_UViG_650716055_000001-650716055-650917123
Arc-VirIMGVR_UViG_650716055_000001-650716055-650917123
Identity
- Kingdom:
- archaea
Quality
57.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-128
D2
medium
residues 147-220
D3
medium
residues 221-260_276-289
Domain cluster:
representative
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1sr2A00 | 1.20.120.160 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain | 0.74 | 50.0 | 3.85e-01 | 70.4% | 62.1% |
| 4ar9A02 | 1.10.390.20 | Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › | 0.74 | 52.0 | 3.76e-01 | 74.1% | 73.9% |
| 2oo2A00 | 1.20.1270.90 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like | 0.71 | 50.0 | 4.50e-01 | 74.1% | 76.3% |
| 1h72C02 | 3.30.70.890 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain | 0.66 | 51.0 | 3.90e-01 | 87.0% | 57.0% |
| 1pgjA02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.65 | 50.0 | 3.27e-01 | 87.0% | 72.1% |
| 3r0vA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.60 | 52.0 | 3.36e-01 | 98.1% | 55.3% |
| 2zigA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.60 | 47.0 | 3.09e-01 | 87.0% | 56.8% |
| 4rpfA02 | 3.30.70.890 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain | 0.59 | 46.0 | 3.58e-01 | 90.7% | 69.9% |
| 1vwxQ00 | 3.100.10.10 | Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › | 0.58 | 40.0 | 2.84e-01 | 74.1% | 67.9% |
| 3hnrA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.54 | 40.0 | 2.86e-01 | 85.2% | 95.3% |
| 2cruA01 | 1.10.8.140 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › PDCD5, DNA-binding domain | 0.54 | 39.0 | 3.65e-01 | 85.2% | 83.1% |
| 2eapA01 | 1.10.150.50 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 | 0.51 | 36.0 | 3.29e-01 | 75.9% | 59.7% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3550640 | 197.1.1.5 ↗ | alpha bundles › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › SNX17-31_F2_FERM | 0.87 | 60.0 | 5.60e-01 | 72.2% | 63.1% |
| 4073885 | 314.1.1.9 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_His | 0.83 | 55.0 | 3.35e-01 | 72.2% | 12.1% |
| 5079552 | 2005.1.1.2 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b | 0.79 | 55.0 | 3.21e-01 | 72.2% | 67.3% |
| 5008700 | 3930.1.1.0 ↗ | alpha bundles › Helical bundle insertion in helicase domains › Helical bundle in Hef helicase › Helical bundle in Hef helicase | 0.76 | 52.0 | 3.86e-01 | 70.4% | 60.8% |
| 5035797 | 5060.1.1.1 ↗ | alpha bundles › V-type ATP synthase subunit C › V-type ATP synthase subunit C › V-type ATP synthase subunit C › vATP-synt_AC39 | 0.71 | 55.0 | 3.60e-01 | 83.3% | 50.9% |
| 3733625 | 2006.1.4.28 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › MKT1_N | 0.70 | 48.0 | 3.08e-01 | 72.2% | 32.4% |
| 4028436 | 2006.1.4.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like | 0.69 | 48.0 | 3.10e-01 | 74.1% | 31.0% |
| 3704808 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.68 | 57.0 | 3.29e-01 | 92.6% | 10.5% |
| 3718001 | 304.1.1.1 ↗ | a+b two layers › Alpha-beta plaits › GHMP Kinase, C-terminal domain › GHMP Kinase, C-terminal domain › GHMP_kinases_C | 0.66 | 53.0 | 3.81e-01 | 87.0% | 50.0% |
| 142326 | 2006.1.4.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I | 0.63 | 49.0 | 3.25e-01 | 87.0% | 48.9% |
| 4979476 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.55 | 39.0 | 2.61e-01 | 75.9% | 31.4% |
| 4344279 | 3431.1.1.0 ↗ | alpha bundles › Helical domain in autophagy protein 5 › Helical domain in autophagy protein 5 › Helical domain in autophagy protein 5 | 0.55 | 48.0 | 3.40e-01 | 100.0% | 87.6% |
| 4948238 | 2004.1.1.194 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C_2 | 0.52 | 38.0 | 2.57e-01 | 79.6% | 80.4% |