←Back to structures

gene_355724

Arc-Vir

IMGVR_UViG_7000000038_000126-7000000038-C4269597__gene_355724

Identity

Protein ID:
gene_355724 ↗
Kingdom:
archaea

Quality

79.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 239-288
PDB
Domain cluster: representative
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6vddA02 1.20.1060.10 Mainly Alpha › Up-down Bundle › Taq DNA Polymerase; Chain T, domain 4 › Taq DNA Polymerase; Chain T, domain 4 0.76 47.0 3.48e-01 82.0% 27.0%
2i0zA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.62 48.0 2.97e-01 82.0% 63.1%
1l8dA00 1.10.287.510 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.60 48.0 3.81e-01 100.0% 43.7%
2zhgA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.55 45.0 3.34e-01 88.0% 65.3%
2qxfA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.53 42.0 2.77e-01 86.0% 76.6%
2ecjA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.51 37.0 3.60e-01 86.0% 69.0%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4661496 5.1.4.37 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nup160 0.62 45.0 2.49e-01 76.0% 7.0%
3770678 386.1.1.143 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › Znf_XAF1_N 0.51 39.0 3.83e-01 94.0% 81.8%
3818617 376.1.1.103 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_Vps41 0.50 36.0 3.51e-01 76.0% 81.8%
D2 high residues 297-349
PDB
Domain cluster: representative
D3 high residues 357-432
PDB
Domain cluster: representative
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3615104 245.1.1.1 ↗ a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C 0.55 36.0 3.35e-01 88.2% 52.6%
D4 medium residues 13-109
PDB
Domain cluster: representative
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2awnC03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 26.0 3.24e-01 79.4% 62.1%
1nh2D02 2.30.18.10 Mainly Beta › Roll › TATA box binding Protein, subunit D; domain 2 › Transcription factor IIA (TFIIA), beta-barrel domain 0.59 30.0 3.88e-01 81.4% 95.8%
1gutA00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.58 25.0 2.99e-01 80.4% 55.2%
2n0kA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 33.0 3.45e-01 85.6% 59.6%
4bj8K00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.58 32.0 3.01e-01 94.8% 42.5%
1goiB03 2.10.10.20 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 0.56 25.0 3.15e-01 84.5% 70.6%
8afoA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 35.0 3.65e-01 80.4% 72.7%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3939294 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 39.0 2.68e-01 73.2% 86.5%
3938746 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 35.0 2.38e-01 70.1% 86.8%
3611297 264.1.1.0 ↗ beta barrels › LigT-like › LigT-related › LigT-related 0.50 29.0 2.59e-01 94.8% 36.1%
D5 medium residues 110-238
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4njcA00 3.10.20.730 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNAP, epsilon subunit-like 0.65 29.0 3.97e-01 77.5% 85.0%
1n26A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 29.0 3.66e-01 91.5% 69.2%
4a18X01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.61 30.0 3.81e-01 83.7% 78.5%
3l5iA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 31.0 3.61e-01 91.5% 69.3%
2jxtA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.58 28.0 3.49e-01 78.3% 75.0%
2pn5A03 2.60.40.1940 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 30.0 3.35e-01 91.5% 62.9%
2qsdA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.56 29.0 3.76e-01 91.5% 92.5%
2dkmA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 28.0 3.10e-01 91.5% 56.7%
4hsaF02 2.60.40.2150 Mainly Beta › Sandwich › Immunoglobulin-like › Interleukin-17 receptor A/B, fibronectin-III-like domain 2 0.55 32.0 3.53e-01 90.7% 69.5%
1vwxS02 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.55 28.0 3.48e-01 85.3% 81.6%
1uenA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 29.0 2.99e-01 91.5% 52.8%
2wliA02 2.60.40.1400 Mainly Beta › Sandwich › Immunoglobulin-like › G protein-activated inward rectifier potassium channel 1 0.52 37.0 3.45e-01 93.0% 57.1%
2hj1A00 3.10.20.280 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RnfH-like 0.52 26.0 3.15e-01 97.7% 74.0%
3jamD02 3.30.1140.32 Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › Ribosomal protein S3, C-terminal domain 0.51 27.0 2.69e-01 86.0% 46.6%
ECOD (32)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3508212 3115.1.1.6 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › DUF4494 0.72 35.0 4.66e-01 77.5% 85.7%
4939739 3115.1.1.1 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.67 32.0 4.54e-01 77.5% 98.3%
4967222 3115.1.1.1 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.66 32.0 4.47e-01 83.7% 98.3%
5030993 3115.1.1.1 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.65 31.0 3.84e-01 77.5% 72.5%
4990637 3115.1.1.1 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.64 31.0 3.82e-01 77.5% 71.1%
4951473 3115.1.1.1 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.64 32.0 4.32e-01 78.3% 95.2%
4996552 3115.1.1.1 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.64 31.0 3.73e-01 77.5% 68.2%
4128974 3115.1.1.1 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.64 32.0 4.01e-01 77.5% 77.5%
4943401 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.64 31.0 3.79e-01 77.5% 70.6%
3892842 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.64 31.0 4.06e-01 78.3% 87.7%
4084879 3115.1.1.1 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.64 32.0 3.89e-01 77.5% 72.9%
4942818 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.63 35.0 3.47e-01 84.5% 50.0%
2106284 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.63 33.0 4.35e-01 83.7% 95.5%
4607738 4.1.1.17 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.61 32.0 3.52e-01 78.3% 60.9%
1442666 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.60 31.0 3.78e-01 83.7% 77.8%
5033281 304.100.1.1 ↗ a+b two layers › Alpha-beta plaits › PurS-like › PurS-like › PurS 0.59 30.0 4.00e-01 76.7% 96.9%
3787050 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.57 31.0 3.49e-01 85.3% 67.4%
3394878 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.57 31.0 3.39e-01 91.5% 61.0%
3551719 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.56 30.0 3.70e-01 80.6% 85.3%
3797444 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 29.0 3.21e-01 91.5% 59.0%
4216863 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 33.0 3.94e-01 93.0% 90.6%
2741079 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.55 29.0 3.63e-01 82.2% 90.1%
3522399 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.54 29.0 3.18e-01 91.5% 61.0%
3499689 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 30.0 3.46e-01 86.8% 72.6%
4078175 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 28.0 3.15e-01 91.5% 63.2%
3585676 11.1.1.593 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › INTS7_C 0.53 31.0 3.11e-01 91.5% 53.5%
2831852 3115.1.1.1 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.53 28.0 3.10e-01 86.0% 62.4%
3224575 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 28.0 3.21e-01 91.5% 68.9%
3179842 11.1.1.644 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_Pom152 0.52 31.0 3.19e-01 91.5% 60.8%
3898917 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 30.0 2.95e-01 91.5% 49.3%
5079276 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.52 38.0 4.03e-01 93.8% 89.1%
3357534 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.51 31.0 3.37e-01 92.2% 73.3%