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gene_114198
Arc-VirIMGVR_UViG_7000000193_000088-7000000193-SRS048870_WUGC_scaffold_52489__gene_114198
Identity
- Protein ID:
- gene_114198 ↗
- Kingdom:
- archaea
Quality
72.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-55
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4mt4A00 | 1.20.1600.10 | Mainly Alpha › Up-down Bundle › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) | 0.76 | 55.0 | 3.17e-01 | 77.4% | 84.3% |
| 3aonA00 | 1.10.287.3240 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.68 | 58.0 | 4.04e-01 | 100.0% | 86.2% |
| 2qlzA02 | 6.10.250.2960 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.62 | 53.0 | 4.57e-01 | 98.1% | 66.3% |
| 1ti2B01 | 3.30.70.20 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 29.0 | 2.20e-01 | 90.6% | 21.8% |
ECOD (35)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4213219 | 109.21.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain | 0.85 | 45.0 | 2.47e-01 | 94.3% | 3.7% |
| 3939245 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.73 | 64.0 | 3.85e-01 | 98.1% | 36.1% |
| 5050683 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.73 | 37.0 | 2.73e-01 | 92.5% | 20.0% |
| 5031334 | 298.1.1.0 ↗ | a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain | 0.72 | 44.0 | 3.12e-01 | 100.0% | 23.7% |
| 4998031 | 101.1.2.136 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_20 | 0.70 | 57.0 | 4.01e-01 | 92.5% | 41.0% |
| 4364399 | 318.1.1.1 ↗ | a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 | 0.69 | 39.0 | 3.24e-01 | 96.2% | 31.1% |
| 3857887 | 5094.1.1.11 ↗ | a+b duplicates or obligate multimers › OmpH-like › OmpH-like › OmpH-like › Fy-3 | 0.69 | 51.0 | 4.45e-01 | 100.0% | 54.7% |
| 4987228 | 331.3.1.0 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like | 0.69 | 57.0 | 3.96e-01 | 90.6% | 95.3% |
| 3560901 | 601.19.1.20 ↗ | alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › Fy-3 | 0.68 | 50.0 | 4.41e-01 | 100.0% | 54.7% |
| 3740226 | 5051.1.1.7 ↗ | alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Nramp | 0.67 | 52.0 | 3.08e-01 | 88.7% | 12.0% |
| 3236416 | 5001.1.1.41 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srw | 0.66 | 55.0 | 3.24e-01 | 88.7% | 65.6% |
| 4957785 | 7523.1.1.0 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II | 0.65 | 39.0 | 3.01e-01 | 84.9% | 29.1% |
| 5010744 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.64 | 33.0 | 3.11e-01 | 84.9% | 41.5% |
| 4647118 | 5086.1.1.119 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › RRG1_C | 0.64 | 55.0 | 3.68e-01 | 100.0% | 73.3% |
| 3586391 | 3937.1.1.2 ↗ | alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 › Innexin | 0.63 | 56.0 | 3.46e-01 | 100.0% | 17.4% |
| 4954852 | 101.1.2.136 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_20 | 0.62 | 55.0 | 3.81e-01 | 98.1% | 31.8% |
| 4931277 | 101.1.2.14 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_5 | 0.61 | 52.0 | 3.68e-01 | 98.1% | 31.6% |
| 3798829 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.61 | 51.0 | 3.41e-01 | 94.3% | 54.2% |
| 5049862 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.61 | 51.0 | 3.54e-01 | 92.5% | 36.0% |
| 4018584 | 6155.1.1.15 ↗ | alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › DUF846 | 0.61 | 51.0 | 3.71e-01 | 94.3% | 36.7% |
| 5006770 | 101.1.2.14 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_5 | 0.60 | 53.0 | 3.77e-01 | 100.0% | 33.1% |
| 4927759 | 101.1.2.136 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_20 | 0.60 | 52.0 | 3.72e-01 | 98.1% | 33.1% |
| 3503534 | 5057.1.1.1 ↗ | alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neur_chan_memb | 0.59 | 52.0 | 3.82e-01 | 100.0% | 38.6% |
| 1665018 | 298.1.1.6 ↗ | a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › G6PD_C | 0.58 | 40.0 | 2.60e-01 | 77.4% | 13.8% |
| 3994884 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.57 | 52.0 | 3.17e-01 | 100.0% | 30.6% |
| 5073431 | 1075.1.1.0 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain | 0.56 | 52.0 | 2.94e-01 | 100.0% | 41.5% |
| 3907411 | 5001.1.1.111 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1, 7TM_GPCR_Srw | 0.55 | 48.0 | 2.95e-01 | 100.0% | 16.1% |
| 3575090 | 11.1.1.97 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set | 0.54 | 48.0 | 3.25e-01 | 96.2% | 29.3% |
| 3774738 | 7529.1.1.11 ↗ | a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › DUF2362 | 0.54 | 49.0 | 4.12e-01 | 98.1% | 65.9% |
| 3905302 | 284.1.3.8 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › Fy-3 | 0.53 | 46.0 | 3.92e-01 | 96.2% | 64.7% |
| 4029392 | 375.1.1.179 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha | 0.53 | 43.0 | 3.08e-01 | 98.1% | 36.2% |
| 3935630 | 3346.1.1.0 ↗ | a+b two layers › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 | 0.52 | 47.0 | 3.11e-01 | 100.0% | 46.8% |
| 3684317 | 109.4.1.1254 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif | 0.52 | 40.0 | 2.27e-01 | 86.8% | 88.0% |
| 3717169 | 298.1.1.24 ↗ | a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 | 0.51 | 47.0 | 3.12e-01 | 100.0% | 70.5% |
| 3623124 | 3346.1.1.1 ↗ | a+b two layers › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 › UfSP2_N | 0.50 | 47.0 | 3.02e-01 | 100.0% | 44.1% |