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gene_114204

Arc-Vir

IMGVR_UViG_7000000193_000088-7000000193-SRS048870_WUGC_scaffold_52489__gene_114204

Identity

Accession:: IMGVR_UViG_7000000193_000088-7000000193-SRS048870_WUGC_scaffold_52489 ↗
Protein ID:: gene_114204 ↗
Kingdom:: archaea

Quality

71.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-73

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF06810.18 best	Phage_scaffold	46.0	8.30e-12	100.0%	38.2%

CATH (18)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2gslF00	1.10.1520.10	Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain	0.70	61.0	4.98e-01	97.1%	94.5%
1uyvB02	3.90.226.10	Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1	0.69	56.0	3.70e-01	91.2%	24.4%
1kl9A02	1.10.150.190	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Translation initiation factor 2; subunit 1; domain 2	0.66	55.0	5.00e-01	92.6%	83.7%
7krzA02	1.10.8.60	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 ›	0.66	55.0	5.18e-01	94.1%	85.7%
4gxzD00	3.40.30.10	Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin	0.64	51.0	3.82e-01	88.2%	82.4%
5c9iA02	1.10.1400.10	Mainly Alpha › Orthogonal Bundle › Penicillin amidase (Acylase) alpha subunit, N-terminal domain › Aminohydrolase, alpha-helical knob region	0.61	47.0	3.68e-01	86.8%	66.5%
2f4lA03	3.10.28.20	Alpha Beta › Roll › Endonuclease I-creI › Acetamidase/Formamidase-like domains	0.60	47.0	4.54e-01	88.2%	76.2%
8ctsB01	1.10.287.70	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.59	40.0	3.70e-01	83.8%	54.0%
1f4qA00	1.10.238.10	Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand	0.59	44.0	3.45e-01	83.8%	39.1%
1r2jA03	1.20.140.10	Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3	0.58	46.0	3.61e-01	85.3%	63.2%
3p42A02	6.10.250.2280	Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces ›	0.57	43.0	4.32e-01	79.4%	84.3%
5grqA00	1.10.8.810	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Daxx helical bundle domain	0.57	46.0	4.24e-01	91.2%	76.7%
4kjmA02	1.20.5.420	Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C	0.57	41.0	4.45e-01	86.8%	100.0%
5cbgA00	1.10.287.70	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.56	43.0	3.77e-01	83.8%	61.8%
1xvhB00	1.20.120.1850	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Ebh helix bundles repeating unit (S and A modules)	0.54	45.0	3.78e-01	92.6%	88.1%
3r72A00	1.10.238.20	Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain	0.53	40.0	3.44e-01	86.8%	48.4%
4egwA02	1.20.58.340	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region	0.52	44.0	3.61e-01	91.2%	89.1%
3ko2A00	3.10.28.10	Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases	0.51	36.0	2.80e-01	75.0%	65.8%

ECOD (19)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4016806	101.1.10.60 ↗	alpha arrays › HTH › HTH › Cyclin-like › DUF2293	0.65	55.0	4.84e-01	97.1%	96.2%
5013034	5054.1.1.8 ↗	alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2	0.64	45.0	4.12e-01	88.2%	54.4%
4985449	5054.1.1.8 ↗	alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2	0.64	45.0	4.19e-01	88.2%	58.8%
3680094	2485.1.1.3 ↗	a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Glutaredoxin	0.62	50.0	4.79e-01	89.7%	100.0%
4163021	5054.1.1.8 ↗	alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2	0.61	48.0	4.23e-01	85.3%	61.0%
3595457	148.1.3.0 ↗	alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain	0.59	47.0	4.35e-01	89.7%	94.4%
3342226	170.1.1.16 ↗	alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C › Caulimovir_coat_dom	0.59	43.0	3.70e-01	82.4%	47.0%
2670701	149.1.1.1 ↗	alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450	0.58	47.0	2.93e-01	89.7%	23.7%
354272	5054.1.1.8 ↗	alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2	0.58	46.0	4.14e-01	86.8%	68.8%
5053994	632.7.1.0 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain	0.58	48.0	4.70e-01	91.2%	100.0%
3724928	192.8.1.35 ↗	alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › DUF6594	0.56	43.0	3.65e-01	86.8%	51.4%
3688307	108.1.1.98 ↗	alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_5, EF-hand_7	0.56	44.0	3.30e-01	88.2%	38.6%
3735247	108.1.1.99 ↗	alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5, EF-hand_6, EF-hand_7	0.56	44.0	3.36e-01	89.7%	41.1%
4944157	148.1.3.0 ↗	alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain	0.54	36.0	3.37e-01	70.6%	55.6%
3924535	5054.1.1.2 ↗	alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans	0.53	44.0	2.85e-01	89.7%	74.2%
4012484	102.1.1.0 ↗	alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like	0.53	40.0	3.26e-01	88.2%	47.1%
3839582	164.1.1.1 ↗	alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › CM_2	0.52	46.0	4.10e-01	98.5%	85.3%
4964499	191.1.1.10 ↗	alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_6	0.51	42.0	3.26e-01	86.8%	62.1%
3247967	101.1.1.28 ↗	alpha arrays › HTH › HTH › Three-helical HTH › SWIRM	0.51	39.0	3.53e-01	80.9%	90.0%