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gene_114206

Arc-Vir

IMGVR_UViG_7000000193_000088-7000000193-SRS048870_WUGC_scaffold_52489__gene_114206

Identity

Accession:: IMGVR_UViG_7000000193_000088-7000000193-SRS048870_WUGC_scaffold_52489 ↗
Protein ID:: gene_114206 ↗
Kingdom:: archaea

Quality

90.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 74-209

PDB

Domain cluster: representative

CATH (6)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3cqbB01	3.30.2010.10	Alpha Beta › 2-Layer Sandwich › Zincin-like › "Metalloproteases (""zincins""), catalytic domain"	0.55	35.0	4.00e-01	82.4%	90.4%
5ksoA00	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.54	41.0	3.83e-01	78.7%	97.0%
3k7lA01	3.40.390.10	Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › Collagenase (Catalytic Domain)	0.52	40.0	3.57e-01	81.6%	89.3%
3ievA01	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.51	39.0	3.52e-01	78.7%	91.9%
2gj8D00	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.51	42.0	3.91e-01	88.2%	94.2%
4p02B02	3.30.379.20	Alpha Beta › 2-Layer Sandwich › Chitobiase; domain 2 ›	0.51	35.0	3.70e-01	79.4%	77.9%

ECOD (18)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4013478	2004.1.1.0 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases	0.57	44.0	3.66e-01	81.6%	95.0%
3959412	2498.1.1.10 ↗	mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M48	0.56	35.0	3.68e-01	82.4%	67.2%
3596937	2498.1.1.0 ↗	mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain"	0.55	34.0	3.91e-01	90.4%	85.0%
3959513	2498.1.1.10 ↗	mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M48	0.55	32.0	3.25e-01	80.1%	56.3%
3701362	7515.1.1.0 ↗	a/b three-layered sandwiches › Alkaline phosphatase-like › Alkaline phosphatase-like › Alkaline phosphatase-like	0.55	44.0	3.47e-01	86.8%	80.7%
3947708	2498.1.1.66 ↗	mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › CobT	0.53	44.0	3.61e-01	88.2%	68.6%
3258300	2004.1.1.118 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AIG1	0.53	45.0	3.55e-01	92.6%	88.6%
4659401	2004.1.1.73 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1	0.52	39.0	3.75e-01	77.9%	97.5%
224054	3598.1.1.0 ↗	a/b three-layered sandwiches › Cellulose Synthase Subunit B a/b domain › Cellulose Synthase Subunit B a/b domain › Cellulose Synthase Subunit B a/b domain	0.52	36.0	3.81e-01	79.4%	79.2%
4026261	6147.1.1.2 ↗	alpha arrays › C-terminal domain of Dbr1 › C-terminal domain of Dbr1 › C-terminal domain of Dbr1 › DBR1	0.52	42.0	3.09e-01	86.0%	75.3%
3498198	2498.1.1.14 ↗	mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M8	0.52	45.0	3.07e-01	96.3%	62.4%
4181081	2004.1.1.54 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Septin	0.51	40.0	3.28e-01	83.1%	92.8%
3200271	2007.2.2.8 ↗	a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Phosphotyrosine protein phosphatases I-like › PIG-S	0.51	44.0	4.13e-01	94.1%	90.3%
3710319	2498.1.1.14 ↗	mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M8	0.51	44.0	3.50e-01	96.3%	69.0%
3607531	2498.1.1.14 ↗	mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M8	0.51	45.0	3.39e-01	99.3%	58.0%
4597012	2004.1.1.73 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1	0.51	38.0	3.50e-01	78.7%	90.6%
3698966	2498.1.1.14 ↗	mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M8	0.50	45.0	3.64e-01	99.3%	78.5%
4998808	7512.1.1.0 ↗	a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase	0.50	40.0	3.52e-01	85.3%	97.1%

D2 medium residues 210-368

PDB

Domain cluster: representative

CATH (20)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4kb2A01	1.10.132.20	Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor	0.87	43.0	5.27e-01	83.0%	71.6%
1dd5A01	1.10.132.20	Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor	0.86	43.0	5.24e-01	81.8%	72.5%
6vudA01	1.10.132.20	Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor	0.81	41.0	4.96e-01	81.8%	72.5%
4oydB00	1.10.132.20	Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor	0.79	40.0	4.70e-01	81.8%	67.5%
2o5iN07	1.10.132.30	Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › RNA polymerase Rpb1 funnel domain	0.78	40.0	4.73e-01	74.8%	69.8%
8ek4A01	1.20.120.20	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein	0.72	40.0	4.39e-01	86.8%	64.7%
3gi7A00	1.20.1270.180	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 ›	0.69	32.0	3.92e-01	79.2%	67.0%
1wp7A00	1.10.287.770	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YojJ-like	0.68	29.0	4.55e-01	84.9%	100.0%
3layF00	1.20.120.1490	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) ›	0.68	34.0	4.86e-01	83.6%	100.0%
3favD00	1.10.287.1060	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like	0.67	31.0	4.33e-01	76.1%	88.5%
3s84A02	1.20.120.20	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein	0.66	43.0	4.33e-01	86.2%	65.0%
4aflA00	6.10.140.1740	Special › Helix non-globular › Helix Hairpins ›	0.61	35.0	4.35e-01	88.7%	89.2%
1z0pA00	1.20.58.90	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.57	27.0	3.76e-01	79.2%	94.5%
2gd5A00	6.10.140.1230	Special › Helix non-globular › Helix Hairpins ›	0.55	42.0	4.44e-01	90.6%	89.4%
2ch7A00	1.10.287.950	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Methyl-accepting chemotaxis protein	0.53	33.0	2.65e-01	88.1%	30.7%
2rldA00	1.20.1440.60	Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence	0.53	32.0	3.65e-01	92.5%	81.6%
4mh6A00	1.10.287.1700	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.52	32.0	3.29e-01	88.7%	59.7%
1yf2A02	1.10.287.1120	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Bipartite methylase S protein	0.52	33.0	3.80e-01	85.5%	91.6%
1fewA00	1.20.58.70	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.52	34.0	3.32e-01	89.3%	59.0%
2yf4F00	1.10.3420.10	Mainly Alpha › Orthogonal Bundle › putative ntp pyrophosphohydrolase like fold › putative ntp pyrophosphohydrolase like domain	0.50	35.0	3.73e-01	71.1%	80.4%

ECOD (20)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5055969	5058.1.1.0 ↗	alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region	0.88	41.0	5.40e-01	76.1%	77.9%
4980120	5058.1.1.0 ↗	alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region	0.83	36.0	4.85e-01	72.3%	74.4%
4137468	310.2.1.1 ↗	a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › RRF	0.83	42.0	3.99e-01	81.8%	42.7%
5055977	5058.1.1.0 ↗	alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region	0.79	39.0	4.89e-01	79.2%	76.0%
4989360	310.2.1.84 ↗	a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › HAMP	0.79	42.0	4.61e-01	83.0%	63.8%
3189978	3291.1.1.0 ↗	alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related	0.78	42.0	4.92e-01	83.6%	73.0%
3516870	5094.1.1.0 ↗	a+b duplicates or obligate multimers › OmpH-like › OmpH-like › OmpH-like	0.78	40.0	4.86e-01	81.1%	75.2%
5076400	5058.1.1.0 ↗	alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region	0.76	37.0	4.74e-01	77.4%	78.9%
3419377	1075.4.1.1 ↗	alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_membrane	0.66	37.0	3.40e-01	81.8%	41.9%
4231910	4168.1.1.1 ↗	alpha duplicates or obligate multimers › HAMP domain › HAMP domain › HAMP domain › HAMP	0.64	35.0	4.20e-01	70.4%	78.2%
3385053	5076.2.1.10 ↗	alpha complex topology › Mitochondrial ADP/ATP carrier-like › Putative sulfate permease CysZ › Putative sulfate permease CysZ › PF29520	0.57	45.0	3.75e-01	81.8%	88.9%
5055565	192.15.1.224 ↗	alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › SHOCT	0.57	33.0	3.65e-01	76.7%	70.0%
3584684	1075.4.1.1 ↗	alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_membrane	0.55	37.0	2.82e-01	91.2%	29.3%
3691750	376.1.1.8 ↗	few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › U-box	0.54	43.0	4.47e-01	81.8%	100.0%
3699468	3755.3.1.0 ↗	alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin	0.54	34.0	3.16e-01	88.1%	49.5%
4475763	3755.1.1.11 ↗	alpha bundles › YscO-like › Putative type III secretion protein YscO-related › Putative type III secretion protein YscO-related › She9_MDM33	0.53	32.0	2.98e-01	87.4%	46.8%
3941435	601.4.1.0 ↗	alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains	0.53	44.0	4.53e-01	87.4%	98.0%
3742303	310.2.1.1 ↗	a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › RRF	0.51	43.0	4.01e-01	88.7%	84.5%
3968294	1075.4.1.0 ↗	alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold	0.51	37.0	3.09e-01	100.0%	42.5%
3623410	2004.1.1.198 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23	0.50	43.0	3.08e-01	96.2%	60.0%