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gene_114209

Arc-Vir

IMGVR_UViG_7000000193_000088-7000000193-SRS048870_WUGC_scaffold_52489__gene_114209

Identity

Accession:: IMGVR_UViG_7000000193_000088-7000000193-SRS048870_WUGC_scaffold_52489 ↗
Protein ID:: gene_114209 ↗
Kingdom:: archaea

Quality

78.7 mean pLDDT

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 148-205

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05133.20 best	SPP1_portal	33.9	2.70e-08	93.1%	11.7%

CATH (5)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3iylU02	1.10.287.1520	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.69	47.0	4.92e-01	72.4%	77.4%
1l8qA03	1.10.1750.10	Mainly Alpha › Orthogonal Bundle › Chromosomal Replication Initiator Protein Dnaa; Chain: A; › DnaA protein, C-terminal DNA-binding domain	0.56	40.0	3.39e-01	79.3%	74.8%
2aamC00	3.20.20.70	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I	0.53	39.0	2.48e-01	82.8%	16.1%
5iceA02	3.40.50.150	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39	0.51	42.0	2.77e-01	91.4%	20.7%
2bvlA01	1.20.58.1190	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.50	38.0	3.50e-01	91.4%	87.2%

ECOD (11)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5012367	101.1.1.0 ↗	alpha arrays › HTH › HTH › Three-helical HTH	0.81	49.0	5.08e-01	70.7%	65.5%
3511359	4038.1.1.0 ↗	alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein	0.77	57.0	3.49e-01	77.6%	80.0%
3215887	509.1.1.0 ↗	alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain	0.70	50.0	4.53e-01	74.1%	72.0%
3928749	170.1.1.0 ↗	alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C	0.67	51.0	4.43e-01	81.0%	100.0%
3809254	509.1.1.1 ↗	alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PAH	0.66	50.0	4.78e-01	79.3%	76.9%
3821967	509.1.1.1 ↗	alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PAH	0.63	51.0	4.67e-01	86.2%	76.0%
3831406	509.1.1.12 ↗	alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PF25972	0.62	49.0	4.62e-01	84.5%	74.3%
3814902	509.1.1.1 ↗	alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PAH	0.61	53.0	4.85e-01	94.8%	76.0%
5043437	192.8.1.0 ↗	alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain	0.56	49.0	4.05e-01	100.0%	94.3%
3784124	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.55	47.0	2.74e-01	100.0%	58.2%
4828003	310.2.1.0 ↗	a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF	0.54	44.0	3.63e-01	98.3%	98.3%