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gene_114219

Arc-Vir

IMGVR_UViG_7000000193_000088-7000000193-SRS048870_WUGC_scaffold_52489__gene_114219

Quality

65.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 17-78
PDB
Domain cluster: representative
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1u78A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.83 54.0 6.20e-01 82.3% 93.3%
4izzB02 1.10.10.1680 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › HetR, N-terminal DNA-binding domain 0.79 54.0 5.23e-01 88.7% 64.7%
4go1A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 55.0 5.88e-01 93.5% 87.0%
5dukB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 58.0 5.71e-01 98.4% 76.1%
1bjaA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 59.0 5.17e-01 100.0% 56.8%
6abqB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 67.0 5.61e-01 100.0% 61.3%
4jqfA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 64.0 6.09e-01 100.0% 93.2%
2y9yA02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.72 52.0 5.40e-01 88.7% 83.9%
2xigA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 64.0 5.65e-01 100.0% 70.3%
4mtdD01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 62.0 5.55e-01 100.0% 69.3%
4etsA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 64.0 5.69e-01 100.0% 86.2%
3mwmA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 63.0 5.90e-01 100.0% 81.3%
5dymA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 63.0 5.44e-01 100.0% 67.7%
4eqqA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 48.0 5.36e-01 77.4% 91.7%
4fcyB02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.71 58.0 5.77e-01 95.2% 89.2%
4esjA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 60.0 5.34e-01 96.8% 74.4%
2zj2A03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 60.0 5.50e-01 100.0% 78.6%
5hvqC02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 61.0 5.19e-01 98.4% 66.3%
3lmmB05 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 55.0 5.56e-01 100.0% 91.8%
4ev0A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 56.0 5.25e-01 100.0% 74.0%
3solA00 1.20.58.1630 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Chaperone lipoprotein PulS/OutS 0.67 54.0 4.87e-01 91.9% 73.6%
1stzA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 56.0 5.12e-01 100.0% 70.6%
4i2oA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 57.0 5.28e-01 100.0% 75.0%
2xkoA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 59.0 5.10e-01 100.0% 70.2%
2nriB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 58.0 5.04e-01 100.0% 66.3%
2fmyA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 57.0 5.24e-01 100.0% 78.0%
3d0sA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 58.0 5.29e-01 100.0% 80.0%
3b02A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 57.0 5.15e-01 100.0% 74.1%
7pzaA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 57.0 5.06e-01 98.4% 77.9%
5cvrA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 55.0 5.02e-01 100.0% 76.2%
3jtgA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 53.0 4.86e-01 98.4% 91.8%
4hqeA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 55.0 4.65e-01 100.0% 61.0%
2oerA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.61 52.0 3.83e-01 100.0% 50.8%
7neaA01 3.30.470.10 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain 0.60 50.0 4.06e-01 95.2% 72.7%
1a41A02 1.20.120.380 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Type 1-topoisomerase catalytic fragment, domain 2 0.59 46.0 4.17e-01 91.9% 69.1%
2m7bA00 1.10.10.1920 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.57 47.0 4.51e-01 96.8% 89.6%
1cukA02 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.57 46.0 4.38e-01 93.5% 93.4%
4a8eA01 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.56 44.0 3.98e-01 100.0% 63.2%
4azsA03 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.54 38.0 3.09e-01 79.0% 69.7%
6fhpD00 1.10.390.10 Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 0.54 38.0 3.83e-01 77.4% 87.1%
2ip6A00 1.20.1440.140 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.53 41.0 3.72e-01 85.5% 77.0%
4od8D00 6.10.140.1880 Special › Helix non-globular › Helix Hairpins › 0.53 37.0 3.99e-01 100.0% 90.2%
3llkA01 1.20.120.1960 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › QSOX sulfhydryl oxidase domain 0.52 38.0 3.38e-01 82.3% 81.6%
3ko2A00 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.51 42.0 3.26e-01 100.0% 64.0%
ECOD (55)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3184342 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.88 67.0 6.88e-01 90.3% 83.3%
3225063 101.1.2.518 alpha arrays › HTH › HTH › winged helix domain › HTH_DNAJC9 0.83 66.0 6.21e-01 100.0% 70.7%
3931733 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.82 67.0 6.01e-01 88.7% 64.7%
3522325 101.1.1.75 alpha arrays › HTH › HTH › Three-helical HTH › HTH_48 0.79 61.0 6.01e-01 90.3% 78.5%
3991429 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.78 69.0 5.70e-01 96.8% 61.0%
3905735 101.1.2.94 alpha arrays › HTH › HTH › winged helix domain › ANAPC2 0.77 68.0 6.14e-01 100.0% 74.1%
4971999 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.77 68.0 5.39e-01 100.0% 68.8%
4635301 101.1.1.3 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding 0.76 68.0 5.11e-01 98.4% 86.2%
3706397 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.75 64.0 6.34e-01 100.0% 90.8%
3789417 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.74 65.0 5.23e-01 96.8% 92.2%
4963932 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.73 65.0 5.84e-01 100.0% 75.3%
4976304 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.73 62.0 5.72e-01 95.2% 73.8%
3597393 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.73 63.0 4.82e-01 100.0% 49.3%
3584520 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.73 62.0 5.09e-01 93.5% 62.7%
3291724 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.73 64.0 5.63e-01 96.8% 82.2%
3905943 101.1.2.107 alpha arrays › HTH › HTH › winged helix domain › STN1_2 0.73 64.0 6.09e-01 100.0% 90.4%
3613393 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.72 62.0 5.74e-01 100.0% 75.0%
4524873 101.1.2.10 alpha arrays › HTH › HTH › winged helix domain › Linker_histone 0.72 63.0 5.60e-01 100.0% 78.7%
4032499 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.70 60.0 5.72e-01 100.0% 92.0%
5077428 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.70 61.0 5.42e-01 100.0% 71.1%
3515490 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.70 61.0 5.76e-01 100.0% 81.3%
3505813 101.1.1.123 alpha arrays › HTH › HTH › Three-helical HTH › MCRS_N 0.69 55.0 5.56e-01 90.3% 90.0%
3174958 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.69 56.0 5.86e-01 95.2% 100.0%
3244600 101.1.2.178 alpha arrays › HTH › HTH › winged helix domain › HTH_61 0.69 59.0 5.04e-01 100.0% 80.0%
3952621 101.35.1.0 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.69 53.0 5.18e-01 85.5% 82.6%
3672413 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.68 60.0 5.33e-01 100.0% 85.6%
3987997 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.68 57.0 5.47e-01 100.0% 90.7%
3593317 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.68 59.0 5.68e-01 100.0% 87.1%
3984031 101.1.2.264 alpha arrays › HTH › HTH › winged helix domain › HTH_46 0.67 57.0 5.33e-01 100.0% 77.3%
4124450 101.35.1.4 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3 0.67 52.0 5.11e-01 85.5% 83.8%
3510931 109.4.1.70 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CID 0.67 51.0 3.60e-01 87.1% 26.0%
5014572 2.21.1.3 beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) › HTH_OrfB_IS605 0.66 52.0 3.94e-01 90.3% 43.0%
4934293 4993.1.1.0 extended segments › Glu-tRNAGln amidotransferase C subunit › Glu-tRNAGln amidotransferase C subunit › Glu-tRNAGln amidotransferase C subunit 0.66 53.0 4.94e-01 93.5% 71.2%
3607327 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.65 51.0 5.15e-01 88.7% 90.0%
3959695 131.1.1.0 alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like 0.64 52.0 4.02e-01 91.9% 66.2%
3441839 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.63 55.0 5.18e-01 96.8% 95.9%
3517623 101.1.1.20 alpha arrays › HTH › HTH › Three-helical HTH › CPSF_A 0.63 49.0 4.25e-01 87.1% 94.0%
3243507 101.1.1.289 alpha arrays › HTH › HTH › Three-helical HTH › HOCHOB 0.63 49.0 4.92e-01 88.7% 86.2%
4975282 545.1.2.0 alpha bundles › Gametocyte protein Pfg27-related › Gametocyte protein Pfg27-related › Sporozoite protein UIS3 soluble domain 0.62 49.0 4.64e-01 93.5% 75.0%
4088578 101.35.1.0 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.61 52.0 5.21e-01 100.0% 93.8%
3327323 101.28.1.0 alpha arrays › HTH › helical bundles in FlhC-like proteins › helical bundles in FlhC-like proteins 0.61 44.0 4.38e-01 79.0% 78.5%
3466475 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.60 52.0 4.16e-01 100.0% 51.5%
3391605 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.59 51.0 5.10e-01 100.0% 95.4%
5017696 2484.1.1.336 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF4277 0.59 49.0 3.14e-01 100.0% 82.1%
3482354 283.1.1.1 a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase › Peptidase_M24 0.59 47.0 3.56e-01 91.9% 54.6%
4932900 633.12.1.1 alpha bundles › Bromodomain-like › Ta0600-like › Ta0600-like › UPF0147 0.59 40.0 3.53e-01 71.0% 80.6%
5051738 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 47.0 4.62e-01 93.5% 85.7%
3274262 101.1.2.460 alpha arrays › HTH › HTH › winged helix domain › WHD_DDX60 0.58 48.0 4.26e-01 95.2% 70.5%
3663727 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.58 49.0 4.20e-01 100.0% 67.6%
1031040 101.1.19.1 alpha arrays › HTH › HTH › Bacteriophage lambda ea8.5-related › Lambda_ea8_5 0.57 47.0 4.51e-01 96.8% 89.6%
4636432 6130.1.1.0 alpha complex topology › Selenocysteine synthase N-terminal domain › Selenocysteine synthase N-terminal domain › Selenocysteine synthase N-terminal domain 0.55 35.0 3.55e-01 74.2% 61.5%
5060163 4009.1.1.0 alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins 0.53 36.0 3.62e-01 75.8% 69.2%
5075377 4995.1.1.1 alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like › B12-binding_2 0.53 43.0 3.98e-01 100.0% 73.3%
3689887 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.52 37.0 3.76e-01 75.8% 81.7%
4956583 633.12.1.1 alpha bundles › Bromodomain-like › Ta0600-like › Ta0600-like › UPF0147 0.51 38.0 3.32e-01 95.2% 52.1%
D2 high residues 82-142
PDB