←Back to structures

gene_184450

Arc-Vir

IMGVR_UViG_7000000193_000156-7000000193-C1904329__gene_184450

Identity

Protein ID:
gene_184450 ↗
Kingdom:
archaea

Quality

80.3 mean pLDDT

Cluster

View cluster (241 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 60-147
PDB
Domain cluster: rep: SR-VP_0-2_scaffold_141_4750547_curated_closed_complete_prodigal-single.1__X__X__00649__D23-135
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF09393.17 best DUF2001 42.6 8.50e-11 93.2% 54.7%
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4w64B00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.77 66.0 5.36e-01 100.0% 51.2%
3eaaA00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.75 67.0 5.38e-01 100.0% 52.5%
1y12B00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.72 64.0 5.28e-01 100.0% 55.1%
4hkhA00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.71 64.0 5.31e-01 100.0% 57.7%
2gujA01 2.30.110.40 Mainly Beta › Roll › Pnp Oxidase; Chain A › Phage tail tube protein 0.69 57.0 5.01e-01 97.7% 60.6%
2q9kA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.64 51.0 4.30e-01 100.0% 51.0%
3ix9A00 3.40.430.10 Alpha Beta › 3-Layer(aba) Sandwich › Dihydrofolate Reductase, subunit A › Dihydrofolate Reductase, subunit A 0.61 37.0 3.03e-01 90.9% 32.5%
5hl8C00 3.30.1360.100 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › General secretion pathway protein M, EpsM 0.61 34.0 3.58e-01 90.9% 60.8%
2w9hA00 3.40.430.10 Alpha Beta › 3-Layer(aba) Sandwich › Dihydrofolate Reductase, subunit A › Dihydrofolate Reductase, subunit A 0.59 35.0 2.90e-01 89.8% 33.1%
1y7pB01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.58 38.0 3.95e-01 95.5% 73.8%
4ozjA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 36.0 3.44e-01 94.3% 53.8%
7o4xA01 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 37.0 3.58e-01 95.5% 59.6%
2iabA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 49.0 4.21e-01 97.7% 60.1%
4l82A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 50.0 4.16e-01 100.0% 63.5%
2fbjH02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 33.0 3.60e-01 90.9% 71.2%
2l3tA02 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.55 35.0 3.38e-01 92.0% 55.0%
1ygyA04 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.55 34.0 3.65e-01 93.2% 71.1%
3nqkA02 2.40.128.440 Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein PF14274, DUF4361 0.54 37.0 3.14e-01 71.6% 81.2%
4rlzA02 2.40.30.120 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses 0.54 44.0 4.15e-01 94.3% 71.8%
1j2vA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 37.0 3.59e-01 95.5% 62.4%
2m05A00 3.30.1490.140 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Amyloidogenic glycoprotein, copper-binding domain 0.53 37.0 4.24e-01 89.8% 98.5%
1lp9E02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 33.0 3.40e-01 94.3% 66.3%
1rhfA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 33.0 3.31e-01 95.5% 60.4%
6gdxA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 36.0 3.42e-01 94.3% 58.9%
1p1lA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 36.0 3.45e-01 95.5% 61.8%
1y6zA01 3.30.230.80 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.51 32.0 2.75e-01 87.5% 35.9%
2od6C00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.50 37.0 3.49e-01 93.2% 64.5%
7ufsA01 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.50 43.0 3.18e-01 100.0% 50.2%
1bp1A01 3.15.10.10 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 0.50 41.0 3.25e-01 88.6% 71.7%
ECOD (47)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4140243 1.1.5.82 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF2001 0.97 89.0 7.98e-01 95.5% 73.0%
3581358 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.83 74.0 6.03e-01 95.5% 62.6%
5003885 1.1.5.24 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 0.83 75.0 6.23e-01 96.6% 59.3%
2101663 1.1.5.24 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 0.82 72.0 5.73e-01 93.2% 60.1%
4995820 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.82 73.0 6.31e-01 95.5% 73.8%
2471641 1.1.5.24 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 0.81 75.0 6.13e-01 97.7% 59.1%
2832216 1.1.5.24 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 0.80 71.0 5.84e-01 96.6% 60.1%
4929634 1.1.5.47 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_tube_2 0.79 69.0 4.78e-01 97.7% 30.4%
2471637 1.1.5.24 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 0.79 73.0 6.05e-01 100.0% 59.7%
2832217 1.1.5.24 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 0.79 73.0 6.08e-01 98.9% 61.3%
3964955 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.77 69.0 5.61e-01 97.7% 63.1%
3058416 1.1.5.39 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › TssD 0.77 65.0 5.75e-01 97.7% 63.8%
4009489 1.1.5.23 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP 0.76 68.0 5.58e-01 100.0% 55.5%
3942828 1.1.13.39 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › KPP10_Orf10 0.75 66.0 5.56e-01 100.0% 57.9%
136185 1.1.5.23 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP 0.75 67.0 5.38e-01 100.0% 52.5%
3265120 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.73 67.0 5.28e-01 100.0% 54.3%
3977123 1.1.5.23 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP 0.73 65.0 5.27e-01 100.0% 53.1%
80 1.1.5.23 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP 0.73 64.0 5.27e-01 100.0% 53.8%
3966479 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.72 65.0 5.25e-01 100.0% 57.0%
3264744 1.1.5.23 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP 0.72 65.0 5.17e-01 100.0% 54.3%
5040332 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.69 61.0 5.58e-01 100.0% 73.0%
205 1.1.13.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › DUF2001 0.69 57.0 5.00e-01 97.7% 60.2%
4947204 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.65 55.0 4.97e-01 94.3% 67.5%
3836146 1.1.9.4 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › SAD_SRA 0.64 57.0 4.78e-01 97.7% 66.9%
4147311 304.109.1.1 ↗ a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e › Ribosomal_L23 0.60 43.0 4.15e-01 94.3% 66.0%
4279950 7501.1.1.1 ↗ a/b three-layered sandwiches › Dihydrofolate reductases › Dihydrofolate reductases › Dihydrofolate reductases › DHFR_1 0.60 37.0 2.97e-01 92.0% 32.7%
4675688 304.109.1.1 ↗ a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e › Ribosomal_L23 0.59 42.0 4.14e-01 94.3% 69.5%
3258975 214.1.1.6 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2_2 0.58 35.0 3.37e-01 89.8% 51.0%
3731446 323.1.1.0 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases 0.58 40.0 3.14e-01 70.5% 91.9%
5038472 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.57 46.0 4.28e-01 95.5% 70.0%
4650190 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.56 49.0 3.57e-01 100.0% 74.2%
4599317 304.109.1.1 ↗ a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e › Ribosomal_L23 0.56 43.0 4.25e-01 98.9% 77.4%
4194372 304.109.1.1 ↗ a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e › Ribosomal_L23 0.55 45.0 3.86e-01 100.0% 56.3%
3810758 2004.1.1.100 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › NTPase_1 0.54 33.0 2.69e-01 87.5% 28.6%
3545708 883.1.1.1 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP 0.54 41.0 3.15e-01 81.8% 37.1%
3386302 3186.1.1.1 ↗ a+b two layers › C-terminal domain of FliK › C-terminal domain of FliK › C-terminal domain of FliK › Flg_hook 0.54 31.0 3.16e-01 97.7% 56.5%
4174485 304.109.1.1 ↗ a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e › Ribosomal_L23 0.54 41.0 3.99e-01 98.9% 74.7%
4025055 328.1.1.1 ↗ a+b two layers › IF3-like › AlbA-like › AlbA-like › Alba 0.53 36.0 3.57e-01 92.0% 64.2%
3936893 883.1.1.0 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like 0.53 40.0 2.99e-01 84.1% 30.9%
4500557 304.109.1.1 ↗ a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e › Ribosomal_L23 0.53 39.0 3.71e-01 79.5% 95.2%
5040945 304.124.1.0 ↗ a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like 0.52 39.0 3.34e-01 94.3% 47.3%
3270426 304.109.1.1 ↗ a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e › Ribosomal_L23 0.52 42.0 3.94e-01 94.3% 72.4%
4497770 883.1.1.15 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP+LBP_BPI_CETP_C 0.51 42.0 2.68e-01 88.6% 27.9%
4234820 304.109.1.1 ↗ a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e › Ribosomal_L23 0.51 40.0 3.89e-01 98.9% 75.0%
3322088 883.1.1.1 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP 0.51 41.0 3.12e-01 88.6% 61.9%
3702711 872.1.1.0 ↗ a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like 0.50 43.0 4.33e-01 95.5% 95.6%
3286636 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.50 42.0 3.83e-01 94.3% 80.8%