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gene_186162

Arc-Vir

IMGVR_UViG_7000000193_000218-7000000193-C1910322__gene_186162

Identity

Protein ID:
gene_186162 ↗
Kingdom:
archaea

Quality

76.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 59-106
PDB
Domain cluster: representative
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7zdgC02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.68 56.0 3.69e-01 100.0% 29.3%
4pl0A02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.68 55.0 3.61e-01 100.0% 27.9%
1h6uA01 1.10.8.390 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Internalin N-terminal Cap domain-like 0.66 50.0 5.15e-01 95.8% 97.7%
8d8lM01 1.10.8.50 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.65 51.0 4.53e-01 97.9% 70.4%
3d31A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.64 51.0 3.44e-01 100.0% 28.1%
7zhgO01 1.10.8.50 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.61 49.0 4.58e-01 100.0% 81.8%
2vqeM01 1.10.8.50 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.60 47.0 4.33e-01 100.0% 77.5%
3s93A00 3.30.420.610 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › LOTUS domain-like 0.55 44.0 3.83e-01 93.8% 82.5%
ECOD (30)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4390103 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.79 62.0 5.85e-01 100.0% 71.7%
4019982 101.15.1.0 ↗ alpha arrays › HTH › LysM domain › LysM domain 0.78 66.0 6.12e-01 100.0% 75.0%
3647286 101.15.1.7 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM_RLK 0.77 66.0 5.80e-01 100.0% 64.0%
3309886 101.15.1.9 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM1_NFP_LYK, LysM2_CERK1_LYK3_4_5 0.76 62.0 4.47e-01 100.0% 31.0%
3837369 101.15.1.6 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM2_CERK1_LYK3_4_5 0.76 62.0 4.75e-01 100.0% 39.1%
4216124 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.74 58.0 5.97e-01 100.0% 95.6%
4042822 221.1.2.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif 0.74 62.0 5.47e-01 100.0% 77.3%
3816016 221.1.2.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif 0.73 60.0 5.38e-01 100.0% 92.0%
3385465 221.1.2.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif 0.71 59.0 5.57e-01 100.0% 88.3%
3611431 101.15.1.0 ↗ alpha arrays › HTH › LysM domain › LysM domain 0.69 58.0 5.49e-01 100.0% 81.7%
3785267 221.1.2.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif 0.69 55.0 4.99e-01 100.0% 77.3%
4137071 206.1.3.10 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › CPSase_L_D2 0.67 55.0 3.53e-01 100.0% 23.0%
3177330 221.1.2.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif 0.66 55.0 4.56e-01 100.0% 67.4%
4653737 221.1.2.10 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › SYY_C-terminal 0.66 54.0 4.67e-01 100.0% 72.9%
4012155 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.66 53.0 3.42e-01 100.0% 25.1%
3064461 2004.1.1.5 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.66 53.0 3.51e-01 100.0% 28.5%
3958191 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.66 53.0 3.75e-01 100.0% 34.6%
4027969 102.9.1.0 ↗ alpha arrays › HhH/H2TH › Cdc45 CID domain › Cdc45 CID domain 0.65 52.0 4.40e-01 100.0% 71.6%
4303870 221.1.2.10 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › SYY_C-terminal 0.65 52.0 4.27e-01 100.0% 64.8%
4408780 221.1.2.10 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › SYY_C-terminal 0.63 51.0 4.40e-01 100.0% 75.3%
4487244 3326.1.1.0 ↗ alpha arrays › DNA-binding domain in UvrA › DNA-binding domain in UvrA › DNA-binding domain in UvrA 0.63 51.0 4.32e-01 100.0% 72.2%
4027268 102.2.1.0 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH 0.62 50.0 4.38e-01 100.0% 72.9%
4191030 3326.1.1.0 ↗ alpha arrays › DNA-binding domain in UvrA › DNA-binding domain in UvrA › DNA-binding domain in UvrA 0.62 50.0 4.36e-01 100.0% 76.5%
4028682 102.2.1.0 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH 0.62 50.0 4.07e-01 100.0% 62.9%
4956056 221.1.1.1 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Fer2 0.61 48.0 4.02e-01 100.0% 80.0%
4241375 2004.1.1.5 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.59 47.0 3.19e-01 100.0% 26.1%
4944759 2004.1.1.5 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.58 46.0 3.04e-01 100.0% 27.5%
5055186 2004.1.1.76 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF87 0.52 38.0 2.38e-01 85.4% 73.8%
1736245 304.128.1.0 ↗ a+b two layers › Alpha-beta plaits › ferredoxin-like domain in periplasmic region of MacB › ferredoxin-like domain in periplasmic region of MacB 0.51 35.0 3.74e-01 75.0% 92.7%
4068028 304.48.1.1 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.51 36.0 2.40e-01 87.5% 36.9%