←Back to structures

gene_186165

Arc-Vir

IMGVR_UViG_7000000193_000218-7000000193-C1910322__gene_186165

Identity

Protein ID:
gene_186165 ↗
Kingdom:
archaea

Quality

68.6 mean pLDDT

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 83-184
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF27000.1 best PH_gly_zipper 39.3 7.00e-10 68.6% 61.8%
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5dynA01 3.40.50.11970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.62 38.0 3.80e-01 94.1% 58.5%
3pg7A02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 33.0 3.26e-01 100.0% 46.4%
4ep4A00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.61 39.0 3.28e-01 91.2% 39.2%
5o5iA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 36.0 3.77e-01 75.5% 66.3%
2rrfA00 2.30.29.160 Mainly Beta › Roll › PH-domain like › Zinc finger FYVE domain-containing protein 21, C-terminal 0.56 40.0 3.63e-01 100.0% 54.6%
1icwB00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 30.0 3.48e-01 99.0% 77.3%
1b7eA01 3.90.350.10 Alpha Beta › Alpha-Beta Complex › Transposase Inhibitor Protein From Tn5; Chain A, domain 1 › Transposase Inhibitor Protein From Tn5; Chain A, domain 1 0.52 38.0 2.90e-01 98.0% 31.7%
3dv8A01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 37.0 3.31e-01 100.0% 54.7%
1n7zA01 2.60.340.10 Mainly Beta › Sandwich › baseplate structural protein gp8, domain 1 › baseplate structural protein gp8, domain 1 0.51 40.0 3.43e-01 84.3% 87.9%
3cdxD00 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.51 44.0 3.19e-01 99.0% 56.2%
1d3bB00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.51 27.0 3.07e-01 89.2% 66.7%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4948698 2484.1.1.38 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › eRF1_2 0.65 40.0 3.92e-01 100.0% 55.7%
5050973 2484.1.1.38 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › eRF1_2 0.64 40.0 3.75e-01 100.0% 51.2%
5045329 2484.1.1.38 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › eRF1_2 0.63 40.0 3.85e-01 100.0% 55.7%
3844858 220.1.1.39 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › ZFYVE21_C 0.62 43.0 3.71e-01 100.0% 46.8%
4455492 7525.1.1.1 ↗ a/b three-layered sandwiches › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › His_Phos_1 0.58 42.0 3.05e-01 74.5% 95.6%
3457175 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.58 39.0 2.97e-01 70.6% 54.6%
3280624 3844.2.1.1 ↗ a+b two layers › hydrogenase expression protein-like › MybT EspG5 chaperone › MybT EspG5 chaperone › ESX-1_EspG 0.57 49.0 3.65e-01 94.1% 72.9%
4968172 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 40.0 3.12e-01 100.0% 34.1%
3727689 2008.1.1.143 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF7924 0.56 44.0 3.38e-01 86.3% 76.7%
3931229 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.56 37.0 2.51e-01 94.1% 17.5%
3204747 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.54 45.0 3.34e-01 92.2% 93.2%
4974772 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.53 37.0 3.01e-01 90.2% 37.4%
3367173 7516.1.1.52 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotid_trans 0.52 43.0 3.20e-01 91.2% 91.7%
4308194 330.4.1.1 ↗ a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.52 36.0 3.84e-01 98.0% 87.1%
4798268 223.1.1.3 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › GAF 0.51 45.0 3.55e-01 100.0% 83.5%
3724687 223.1.1.24 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_8 0.50 45.0 3.17e-01 100.0% 48.9%
D2 medium residues 34-82
PDB
Domain cluster: representative
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1r75A00 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.73 51.0 3.92e-01 73.5% 71.8%
4iapA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.71 48.0 3.90e-01 71.4% 69.6%
1mg2A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.69 50.0 2.97e-01 79.6% 10.5%
2h5eA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.69 49.0 3.26e-01 73.5% 23.5%
5hkeA01 3.60.60.10 Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A 0.68 49.0 2.97e-01 75.5% 96.4%
2b5uA03 3.10.380.10 Alpha Beta › Roll › Ribonuclease domain of colicin e3 (Residues 456-551) › Colicin E3-like ribonuclease domain 0.65 47.0 3.82e-01 79.6% 52.0%
2bf1A00 2.170.40.20 Mainly Beta › Beta Complex › HIV Envelope Protein Gp120; Chain G › Human immunodeficiency virus 1, Gp160, envelope glycoprotein 0.65 45.0 2.80e-01 75.5% 56.6%
1a5yA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.65 44.0 2.74e-01 71.4% 26.8%
2k4jA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 44.0 3.38e-01 71.4% 68.6%
2nwvA00 3.30.310.110 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › XisI-like 0.63 44.0 3.43e-01 75.5% 76.8%
2hf1A01 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.63 46.0 4.46e-01 79.6% 78.2%
7uvpA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.62 45.0 2.84e-01 79.6% 47.9%
4akrA01 3.30.1140.60 Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › F-actin capping protein, alpha subunit 0.62 45.0 3.66e-01 83.7% 40.6%
1df0A02 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.58 39.0 3.31e-01 71.4% 54.3%
2kxpA01 3.30.1140.60 Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › F-actin capping protein, alpha subunit 0.58 42.0 3.45e-01 83.7% 40.2%
1xkiA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.58 49.0 3.72e-01 100.0% 62.5%
3cgbA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.57 41.0 2.92e-01 79.6% 70.2%
2bzyA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 37.0 3.50e-01 75.5% 53.2%
1ej6A04 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.56 41.0 2.71e-01 81.6% 66.1%
1yqfB00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.56 39.0 2.79e-01 77.6% 28.8%
1mhnA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 39.0 3.73e-01 77.6% 62.7%
6yleA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 43.0 2.55e-01 83.7% 80.4%
2cudA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 37.0 3.20e-01 73.5% 43.0%
1ujrA01 3.30.720.50 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.54 42.0 3.65e-01 89.8% 60.2%
3ak5D02 2.160.20.20 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.54 38.0 2.16e-01 75.5% 7.1%
1zuyA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 36.0 3.43e-01 71.4% 58.6%
2eczA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 36.0 3.26e-01 73.5% 50.0%
6vlfA03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 35.0 3.41e-01 73.5% 60.3%
1x6gA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 35.0 3.09e-01 75.5% 44.4%
1f8wA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 36.0 2.65e-01 79.6% 69.5%
ECOD (49)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4090709 101.1.2.8 ↗ alpha arrays › HTH › HTH › winged helix domain › Trans_reg_C 0.74 51.0 3.93e-01 73.5% 78.0%
3481724 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.74 53.0 4.11e-01 77.6% 46.4%
4255854 4294.1.1.8 ↗ few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like › PF27112 0.73 55.0 5.52e-01 81.6% 88.0%
3614460 10.15.1.1 ↗ beta sandwiches › jelly-roll › Smp-1-like › Smp-1-like › DUF1935 0.71 49.0 3.73e-01 73.5% 66.7%
4520258 12.3.1.8 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_65N 0.70 52.0 3.18e-01 81.6% 61.3%
3323488 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.70 52.0 3.20e-01 81.6% 28.3%
3974213 4091.1.1.0 ↗ beta complex topology › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like 0.68 48.0 3.42e-01 75.5% 83.4%
3374974 5.1.3.4 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › WD40 0.68 50.0 3.28e-01 81.6% 44.0%
3642552 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.67 50.0 3.28e-01 79.6% 22.9%
4999472 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.66 47.0 3.15e-01 75.5% 75.3%
3928729 5.1.3.6 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 0.66 48.0 3.20e-01 79.6% 37.8%
164936 4294.1.1.2 ↗ few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like › Trm112p 0.65 47.0 4.23e-01 79.6% 62.9%
4572115 4294.1.1.2 ↗ few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like › Trm112p 0.64 46.0 4.50e-01 77.6% 76.4%
3879076 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.63 41.0 3.55e-01 71.4% 41.2%
3519023 3964.1.1.1 ↗ beta meanders › OCRE domain of RBM10 › OCRE domain of RBM10 › OCRE domain of RBM10 › OCRE 0.62 44.0 3.79e-01 73.5% 45.0%
4506302 4294.1.1.2 ↗ few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like › Trm112p 0.62 45.0 4.65e-01 79.6% 93.3%
1779595 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.61 44.0 2.70e-01 81.6% 30.3%
3516924 363.1.1.1 ↗ few secondary structure elements › Thyroglobulin type-1 domain › Thyroglobulin type-1 domain › Thyroglobulin type-1 domain › Thyroglobulin_1 0.61 42.0 3.81e-01 73.5% 62.9%
3791485 6129.1.1.1 ↗ beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD 0.61 51.0 3.32e-01 100.0% 49.8%
3952480 4.1.1.292 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_Rv2311 0.61 42.0 4.40e-01 73.5% 88.9%
None — 0.61 50.0 3.31e-01 95.9% 41.4%
4660398 4294.1.1.2 ↗ few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like › Trm112p 0.61 45.0 4.57e-01 81.6% 88.0%
3903949 5.1.3.7 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › NHL 0.60 50.0 3.07e-01 100.0% 29.4%
3265819 4.1.1.224 ↗ beta barrels › SH3 › SH3 › SH3 › Integrase_p58_C 0.60 43.0 3.40e-01 83.7% 35.5%
3252808 1170.1.2.0 ↗ beta barrels › IL8-related › IL8-related › chemokine-related domain in glycoprotein L (gL) 0.59 47.0 4.16e-01 85.7% 71.4%
3484229 4050.1.1.0 ↗ few secondary structure elements › beta-barrel domain in Capz › beta-barrel domain in Capz › beta-barrel domain in Capz 0.59 43.0 4.33e-01 83.7% 88.0%
3992786 11.1.1.1176 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Beta-prop_Rol-3 0.57 43.0 2.76e-01 89.8% 20.7%
3582967 164.1.1.10 ↗ alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › WSD 0.57 44.0 3.02e-01 85.7% 34.4%
3974608 7515.1.1.0 ↗ a/b three-layered sandwiches › Alkaline phosphatase-like › Alkaline phosphatase-like › Alkaline phosphatase-like 0.57 38.0 2.33e-01 73.5% 10.2%
4887647 4050.1.1.2 ↗ few secondary structure elements › beta-barrel domain in Capz › beta-barrel domain in Capz › beta-barrel domain in Capz › F-actin_cap_A 0.57 42.0 4.21e-01 85.7% 86.3%
4968449 4312.1.1.15 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › DUF4258 0.56 41.0 3.85e-01 83.7% 73.8%
3627280 331.23.1.0 ↗ a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain 0.56 50.0 4.33e-01 100.0% 76.0%
5029687 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.56 39.0 4.03e-01 75.5% 88.9%
3792116 3831.1.1.5 ↗ alpha bundles › Secreted protein of unknown function DUF1311 › Secreted protein of unknown function DUF1311 › Secreted protein of unknown function DUF1311 › WSD 0.56 43.0 2.96e-01 85.7% 34.4%
5082482 4056.1.1.0 ↗ beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein 0.55 40.0 3.62e-01 83.7% 58.7%
3933562 4357.1.1.3 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE_2 0.55 46.0 3.26e-01 100.0% 84.4%
3992398 220.1.1.44 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › POB3_N 0.54 42.0 3.18e-01 83.7% 70.4%
3260335 5.1.4.14 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Peptidase_S9_N 0.54 38.0 2.41e-01 83.7% 25.4%
3580369 4357.1.1.0 ↗ beta barrels › WWE domain › WWE domain › WWE domain 0.54 46.0 3.30e-01 100.0% 90.8%
3530247 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.54 36.0 3.40e-01 73.5% 53.8%
4887360 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.53 38.0 3.66e-01 79.6% 80.0%
3507664 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.53 36.0 3.42e-01 75.5% 58.3%
3393985 394.1.1.0 ↗ few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins 0.53 36.0 3.24e-01 73.5% 61.3%
3819869 391.1.2.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related 0.52 39.0 3.21e-01 81.6% 62.1%
3614726 4357.1.1.0 ↗ beta barrels › WWE domain › WWE domain › WWE domain 0.52 41.0 3.25e-01 95.9% 50.0%
3620934 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.52 35.0 3.06e-01 77.6% 43.8%
3926176 4357.1.1.3 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE_2 0.51 40.0 3.29e-01 91.8% 68.0%
3356274 391.1.1.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.50 39.0 3.22e-01 85.7% 58.9%
3398298 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.50 38.0 3.31e-01 85.7% 85.0%