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gene_66674
Arc-VirIMGVR_UViG_7000000282_000057-7000000282-SRS019685_WUGC_scaffold_54465__gene_66674
Identity
- Protein ID:
- gene_66674 ↗
- Kingdom:
- archaea
Quality
83.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 10-155
Domain cluster:
rep: LC680885.1__BDE75759.1__X__00221__D247-427
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1twfA03 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.80 | 48.0 | 5.66e-01 | 99.3% | 85.1% |
| 1zc1A01 | 2.40.40.50 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › Ubiquitin fusion degradation protein UFD1, N-terminal domain | 0.75 | 40.0 | 4.67e-01 | 89.7% | 72.8% |
| 3d30A01 | 2.40.40.10 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain | 0.73 | 39.0 | 4.51e-01 | 91.1% | 70.4% |
| 4avrA00 | 2.40.40.10 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain | 0.73 | 35.0 | 4.26e-01 | 72.6% | 70.2% |
| 1ynjD04 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.67 | 55.0 | 5.61e-01 | 97.3% | 88.3% |
| 7eu1A01 | 1.10.274.100 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › RNA polymerase Rpb1, domain 3 | 0.65 | 51.0 | 5.18e-01 | 100.0% | 83.8% |
| 4kktA02 | 2.40.30.170 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain | 0.57 | 33.0 | 3.83e-01 | 79.5% | 78.1% |
| 5eiqA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 27.0 | 3.19e-01 | 87.7% | 64.9% |
| 1wc2A00 | 2.40.40.10 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain | 0.54 | 42.0 | 3.97e-01 | 95.2% | 66.7% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4887355 | 1.1.2.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 | 0.77 | 45.0 | 4.87e-01 | 100.0% | 67.7% |
| 3966248 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.75 | 49.0 | 5.50e-01 | 100.0% | 83.5% |
| 5052052 | 1.1.2.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N | 0.74 | 37.0 | 4.54e-01 | 91.1% | 73.7% |
| 4299713 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.73 | 36.0 | 4.26e-01 | 72.6% | 66.7% |
| 3974469 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.73 | 35.0 | 4.29e-01 | 86.3% | 70.5% |
| 349867 | 1.1.2.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › DPBB_1 | 0.72 | 40.0 | 4.48e-01 | 93.8% | 69.6% |
| 5042283 | 208.1.1.56 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › MazE_antitoxin | 0.71 | 40.0 | 3.07e-01 | 89.0% | 26.2% |
| 4419943 | 1.1.2.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › DPBB_1 | 0.71 | 35.0 | 4.20e-01 | 77.4% | 69.0% |
| 3720989 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.70 | 42.0 | 4.73e-01 | 76.0% | 77.3% |
| 4026183 | 1.1.2.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 | 0.69 | 59.0 | 5.90e-01 | 100.0% | 88.7% |
| 4129914 | 1.1.2.31 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2, RNA_pol_Rpb1_3 | 0.67 | 59.0 | 5.12e-01 | 100.0% | 63.7% |
| 4886549 | 275.1.1.1 ↗ | a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › RNA_pol_Rpb1_2 | 0.67 | 58.0 | 5.70e-01 | 100.0% | 87.1% |
| 2886100 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.66 | 62.0 | 5.57e-01 | 100.0% | 76.8% |
| 1746098 | 1.1.2.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 | 0.65 | 58.0 | 5.52e-01 | 100.0% | 82.1% |
| 2968637 | 1.1.2.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 | 0.64 | 60.0 | 5.74e-01 | 100.0% | 88.6% |
| 3652557 | 1.1.2.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › DPBB_1 | 0.63 | 39.0 | 4.82e-01 | 94.5% | 98.9% |
| 5081033 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.59 | 55.0 | 4.93e-01 | 100.0% | 83.5% |
| 3643011 | 1.1.2.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RdRP | 0.59 | 44.0 | 4.67e-01 | 100.0% | 86.9% |
| 5058903 | 1.1.2.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 | 0.58 | 55.0 | 4.96e-01 | 100.0% | 87.9% |
| 3698542 | 1.1.2.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 | 0.58 | 54.0 | 4.81e-01 | 100.0% | 85.9% |
| 3836120 | 275.1.1.1 ↗ | a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › RNA_pol_Rpb1_2 | 0.58 | 54.0 | 4.90e-01 | 100.0% | 91.3% |
| 3509068 | 1.1.2.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 | 0.58 | 53.0 | 4.77e-01 | 97.9% | 82.5% |
| 3374701 | 1.1.2.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb1_2 | 0.57 | 53.0 | 4.95e-01 | 100.0% | 85.0% |
| 3627366 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.56 | 33.0 | 3.92e-01 | 91.8% | 85.0% |
| 3342891 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.52 | 40.0 | 4.15e-01 | 78.8% | 85.9% |