←Back to structures

IMV_membrane_protein

Euk-Vir

Nile_crocodilepox_virus

IMV_membrane_protein__YP_784284__Nile_crocodilepox_virus__1285600

Identity

Accession:
YP_784284 ↗
Protein ID:
IMV_membrane_protein
Kingdom:
euk

Quality

70.6 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Pokkesviricetes› Chitovirales› Poxviridae› Crocodylidpoxvirus› Nile_crocodilepox_virus

TaxID: 1285600

Cluster

View cluster (33 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 73-119
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04872.20 best Pox_L5 33.2 5.60e-08 100.0% 59.0%
CATH (43)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2r31A01 3.30.2180.10 Alpha Beta › 2-Layer Sandwich › ATP12-like › ATP12-like 0.69 57.0 5.14e-01 100.0% 68.2%
2r6iA01 3.30.2180.10 Alpha Beta › 2-Layer Sandwich › ATP12-like › ATP12-like 0.68 57.0 4.62e-01 100.0% 47.9%
1o70A02 2.30.180.10 Mainly Beta › Roll › FAS1 domain › FAS1 domain 0.66 44.0 3.09e-01 70.2% 46.8%
4omfB02 3.10.450.750 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 39.0 3.97e-01 74.5% 61.7%
2ewvA01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.62 49.0 4.02e-01 100.0% 44.1%
2od0A00 3.30.1460.30 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › YgaC/TfoX-N like chaperone 0.62 43.0 3.35e-01 72.3% 74.8%
1x9yA01 3.10.500.10 Alpha Beta › Roll › prostaphopain b, domain 1 › Staphopain proregion domain 0.61 45.0 3.03e-01 78.7% 81.8%
1yqeA01 3.40.630.50 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › AF0625-like 0.61 37.0 2.52e-01 74.5% 15.1%
3jvvA01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.61 48.0 3.94e-01 100.0% 44.0%
2re3B03 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.60 36.0 3.93e-01 70.2% 86.7%
3fvcA01 2.30.30.1230 Mainly Beta › Roll › SH3 type barrels. › 0.59 50.0 4.31e-01 100.0% 81.2%
3asiA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.58 50.0 3.40e-01 100.0% 80.3%
8d3lA01 3.100.10.20 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain 0.58 48.0 4.02e-01 97.9% 79.5%
7lgjA01 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.57 49.0 3.16e-01 100.0% 37.7%
2z1cB00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 42.0 3.58e-01 97.9% 50.0%
6jyxA01 2.10.270.20 Mainly Beta › Ribbon › left handed beta-beta-3-solenoid › 0.57 38.0 2.92e-01 70.2% 84.7%
3igfA02 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 43.0 3.83e-01 100.0% 55.4%
2rowA01 3.30.60.20 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.56 39.0 3.48e-01 74.5% 95.8%
1gbgA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 41.0 2.79e-01 100.0% 18.7%
5k19A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 45.0 2.75e-01 100.0% 26.9%
1qmyA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.55 40.0 2.84e-01 97.9% 23.7%
2dk6A01 3.30.720.50 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.55 39.0 3.17e-01 76.6% 58.5%
4n06A01 3.100.10.20 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain 0.55 44.0 3.83e-01 97.9% 85.4%
7kfuC01 3.100.10.20 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain 0.54 45.0 3.97e-01 97.9% 93.3%
3ap9A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 42.0 3.05e-01 93.6% 29.8%
2gzaA01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.53 43.0 3.47e-01 100.0% 56.5%
5gaeG01 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.53 36.0 3.20e-01 95.7% 44.4%
2rh0A01 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 38.0 3.57e-01 100.0% 62.5%
1wfiA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 38.0 2.95e-01 100.0% 31.3%
4at7A02 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.52 37.0 2.68e-01 78.7% 28.9%
3lxqA01 3.30.1120.80 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.52 37.0 3.02e-01 76.6% 64.6%
2m3xC02 2.40.10.360 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.52 39.0 3.64e-01 91.5% 63.8%
1vpkA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.52 40.0 3.20e-01 97.9% 78.3%
2o30A00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 37.0 3.32e-01 100.0% 50.0%
2byoA00 2.50.20.20 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › 0.51 44.0 2.97e-01 100.0% 63.9%
3ifvC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.51 42.0 2.75e-01 100.0% 32.1%
5o99A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 35.0 3.32e-01 100.0% 58.3%
5mmiG01 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.51 35.0 3.07e-01 95.7% 42.9%
4gp3A03 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.51 39.0 3.14e-01 97.9% 82.8%
4dsdA00 3.40.1420.30 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › 0.51 33.0 2.59e-01 70.2% 27.8%
3d6wB01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 43.0 3.86e-01 100.0% 82.9%
4dohE02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 39.0 3.14e-01 93.6% 94.3%
6i18A04 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.50 39.0 3.23e-01 97.9% 92.5%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3972955 4263.2.1.2 ↗ a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain › DUF6482 0.79 68.0 5.95e-01 97.9% 82.9%
4593898 2.1.1.16 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_bind 0.67 59.0 4.09e-01 100.0% 100.0%
4126343 212.1.1.0 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like 0.67 42.0 3.11e-01 76.6% 24.2%
3949940 319.1.1.4 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › ArsA_HSP20 0.67 50.0 4.22e-01 100.0% 47.1%
5082134 2002.1.1.43 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › His_biosynth 0.65 51.0 3.30e-01 87.2% 20.5%
3180298 4351.1.1.1 ↗ alpha arrays › ATP12-like › ATP12-like › ATP12-like › ATP12 0.64 53.0 3.30e-01 100.0% 16.6%
4012965 4351.1.1.0 ↗ alpha arrays › ATP12-like › ATP12-like › ATP12-like 0.64 51.0 3.31e-01 95.7% 18.7%
3599989 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.62 46.0 3.61e-01 100.0% 36.4%
3589933 243.3.1.11 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Staphopain_pro 0.61 44.0 3.03e-01 78.7% 79.2%
4098275 318.1.1.1 ↗ a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.61 43.0 3.71e-01 95.7% 45.0%
4942349 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.61 52.0 4.15e-01 100.0% 56.6%
4950782 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.61 50.0 3.80e-01 100.0% 87.7%
3627795 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 44.0 3.71e-01 78.7% 85.9%
3607176 101.17.1.4 ↗ alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › HU-CCDC81_euk_2 0.60 38.0 3.20e-01 72.3% 34.1%
3914165 5.1.4.269 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, HELP, Beta-prop_EML 0.60 48.0 2.94e-01 95.7% 23.3%
3028388 319.1.1.4 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › ArsA_HSP20 0.60 47.0 4.17e-01 100.0% 58.3%
4950471 243.6.1.0 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain 0.60 38.0 3.57e-01 76.6% 50.0%
4936682 243.6.1.8 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › AF_0587-like_pre-PUA 0.59 40.0 3.34e-01 70.2% 40.0%
3284412 241.11.1.6 ↗ a+b two layers › Type III secretory system chaperone-like › YjbR-like › YjbR-like › TfoX_N 0.59 40.0 3.13e-01 70.2% 32.4%
3245227 5.1.4.6 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,ANAPC4_WD40 0.59 49.0 3.05e-01 100.0% 41.0%
3289942 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.59 41.0 3.55e-01 95.7% 43.5%
3865742 319.1.1.12 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS_DNAAF11_C 0.59 43.0 3.73e-01 100.0% 47.1%
5072222 243.6.1.0 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain 0.59 39.0 3.39e-01 70.2% 42.7%
3479119 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.59 43.0 3.28e-01 100.0% 29.6%
4990499 2003.1.5.32 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Cons_hypoth95 0.58 47.0 3.00e-01 95.7% 60.4%
3388925 319.1.1.3 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS 0.58 44.0 3.63e-01 100.0% 43.2%
3508366 5.1.4.492 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR35_2nd, Beta-prop_WDR35_TULP_N 0.58 47.0 2.77e-01 95.7% 20.7%
5027174 304.136.1.0 ↗ a+b two layers › Alpha-beta plaits › Oligo-peptide binding protein (OPPA) insertion domain › Oligo-peptide binding protein (OPPA) insertion domain 0.58 41.0 2.94e-01 76.6% 69.3%
4026020 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.58 47.0 2.80e-01 95.7% 26.0%
3946976 2003.1.2.161 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › PF30338 0.57 41.0 2.78e-01 74.5% 52.6%
4352331 101.1.2.788 ↗ alpha arrays › HTH › HTH › winged helix domain › PF29760 0.56 40.0 3.40e-01 95.7% 42.2%
3992641 331.4.1.9 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › CPSF73-100_C 0.55 37.0 3.33e-01 70.2% 48.6%
3567958 6.1.1.11 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › Fascin 0.55 43.0 3.40e-01 97.9% 86.7%
4991966 2003.1.2.12 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › DAO 0.55 48.0 2.90e-01 100.0% 45.4%
3708068 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 44.0 2.84e-01 97.9% 45.5%
3517718 319.1.1.3 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS 0.54 40.0 3.14e-01 100.0% 34.8%
4029231 319.1.1.3 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS 0.54 40.0 3.27e-01 100.0% 40.0%
4573891 6.1.1.11 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › Fascin 0.53 37.0 2.77e-01 74.5% 35.2%
3388895 220.1.1.170 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_alsin 0.53 45.0 3.50e-01 100.0% 50.0%
3209881 109.4.1.207 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_2 0.53 43.0 2.44e-01 95.7% 15.4%
4932407 318.1.1.1 ↗ a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.52 40.0 3.47e-01 93.6% 51.2%
5076084 230.1.1.3 ↗ a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › PTPS 0.52 35.0 2.57e-01 72.3% 58.4%
3197429 244.2.1.10 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › NDH2_C 0.52 34.0 2.17e-01 100.0% 10.6%
5016928 2003.1.5.66 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 0.52 40.0 2.67e-01 87.2% 54.1%
5005203 243.6.1.9 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › TGT_C2 0.52 36.0 3.09e-01 72.3% 46.3%
4969997 243.6.1.0 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain 0.52 34.0 3.11e-01 70.2% 48.6%
3274863 6.1.1.11 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › Fascin 0.52 39.0 3.19e-01 100.0% 83.2%
4992651 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.51 34.0 2.48e-01 70.2% 70.3%
163054 319.1.1.3 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS 0.51 37.0 3.32e-01 100.0% 50.0%
154175 6.1.1.11 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › Fascin 0.51 40.0 3.07e-01 95.7% 75.4%
4863653 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 38.0 3.42e-01 91.5% 84.6%
3216631 319.1.1.3 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS 0.50 41.0 3.43e-01 97.9% 97.8%
3970534 79.1.1.17 ↗ beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › DUF2345 0.50 30.0 2.22e-01 70.2% 20.8%
3743651 6.1.1.11 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › Fascin 0.50 42.0 2.97e-01 100.0% 62.5%