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INT

Euk-Vir

Tipula_oleracea_nudivirus

INT__YP_009116690__Tipula_oleracea_nudivirus__1546257

Identity

Accession:: YP_009116690 ↗
Protein ID:: INT
Kingdom:: euk

Quality

71.6 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Nudiviridae› Deltanudivirus› Tipula_oleracea_nudivirus

TaxID: 1546257

Cluster

View cluster (6 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 42-109_320-330

PDB

Domain cluster: representative

CATH (14)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4mo7A02	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.62	52.0	4.32e-01	93.7%	81.0%
2rg8A00	1.25.40.180	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.61	45.0	3.74e-01	81.0%	56.7%
2i10B02	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.59	48.0	4.19e-01	91.1%	88.8%
1yz4B01	3.90.190.10	Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily	0.59	49.0	4.03e-01	96.2%	98.0%
3shgA00	1.10.3290.10	Mainly Alpha › Orthogonal Bundle › Fic-like fold › Fido-like domain	0.58	47.0	3.65e-01	93.7%	64.6%
3vprA02	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.56	46.0	3.88e-01	93.7%	77.9%
1r3dA00	3.40.50.1820	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain	0.56	43.0	3.00e-01	82.3%	37.7%
2dlaA01	1.20.930.50	Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A ›	0.56	45.0	3.68e-01	91.1%	71.2%
1yvjA02	1.10.510.10	Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1	0.56	43.0	3.30e-01	84.8%	94.9%
2r5sA02	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.53	39.0	3.86e-01	81.0%	79.5%
4g0mA00	3.40.50.2300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator	0.53	39.0	3.36e-01	87.3%	47.4%
1oisA01	1.10.10.41	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Yeast DNA topoisomerase - domain 1	0.52	40.0	3.89e-01	87.3%	96.7%
2kinB01	1.20.58.980	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.51	39.0	3.95e-01	82.3%	91.3%
2pq7A00	1.10.3210.10	Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432	0.50	42.0	3.40e-01	98.7%	69.4%

ECOD (14)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3385836	601.1.1.138 ↗	alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › DUF4118	0.71	56.0	5.07e-01	86.1%	88.2%
4177876	182.1.3.0 ↗	alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › PriX	0.65	54.0	4.93e-01	92.4%	79.0%
3411866	3919.1.1.0 ↗	alpha duplicates or obligate multimers › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › N-terminal domain of COMMD9	0.63	50.0	4.40e-01	89.9%	100.0%
3826382	109.4.1.883 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2	0.60	46.0	4.02e-01	83.5%	54.2%
3940560	371.1.1.0 ↗	few secondary structure elements › Phospholipase A2, PLA2 › Phospholipase A2, PLA2 › Phospholipase A2, PLA2	0.59	43.0	3.94e-01	77.2%	68.6%
3539535	101.1.1.21 ↗	alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc5	0.58	40.0	3.95e-01	72.2%	78.8%
3857632	101.1.2.352 ↗	alpha arrays › HTH › HTH › winged helix domain › HTH_Tnp_Tc5	0.58	39.0	4.05e-01	70.9%	92.0%
3605318	109.4.1.2084 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF7051	0.58	45.0	3.44e-01	86.1%	38.5%
3362789	4133.1.1.2 ↗	alpha arrays › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Tic110	0.57	43.0	4.04e-01	81.0%	85.0%
5060063	4133.1.1.0 ↗	alpha arrays › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like	0.56	39.0	4.09e-01	73.4%	81.4%
3704864	603.1.1.0 ↗	alpha bundles › STAT-like › t-snare proteins › t-snare proteins	0.54	36.0	3.24e-01	70.9%	80.8%
3925111	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.53	38.0	2.91e-01	77.2%	64.0%
3519038	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.52	39.0	3.27e-01	81.0%	67.6%
4990683	138.1.1.2 ↗	alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › Rep_fac_C	0.50	40.0	3.70e-01	88.6%	79.6%

D2 high residues 118-175_236-299

PDB

Domain cluster: representative

CATH (10)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5jk0B01	1.10.443.10	Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core	0.77	73.0	6.37e-01	100.0%	96.5%
3nkhA00	1.10.443.10	Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core	0.72	67.0	5.43e-01	100.0%	87.3%
1fouA01	1.10.246.30	Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 ›	0.67	29.0	3.65e-01	98.4%	64.9%
1qv9A02	6.10.140.120	Special › Helix non-globular › Helix Hairpins ›	0.61	34.0	3.69e-01	100.0%	63.1%
1w33A00	1.10.3160.10	Mainly Alpha › Orthogonal Bundle › Bbcrasp-1 › Bbcrasp-1	0.60	34.0	3.02e-01	86.1%	37.0%
3tjmA02	1.10.1470.20	Mainly Alpha › Orthogonal Bundle › Protein Yjbj; Chain: A; › Fatty acid synthase; domain 2	0.60	32.0	3.65e-01	91.0%	67.8%
1r2jA03	1.20.140.10	Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3	0.52	36.0	3.45e-01	71.3%	86.1%
1rx0A03	1.20.140.10	Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3	0.52	36.0	3.35e-01	70.5%	92.3%
4hr1A00	1.20.1270.410	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 ›	0.51	32.0	3.26e-01	92.6%	64.4%
2fozA00	1.10.4080.10	Mainly Alpha › Orthogonal Bundle › ADP-ribosylglycohydrolase fold › ADP-ribosylation/Crystallin J1	0.51	43.0	3.21e-01	95.1%	95.6%

ECOD (7)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3837728	3843.1.1.0 ↗	alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K	0.66	34.0	3.30e-01	85.2%	43.0%
4027655	5069.1.3.23 ↗	alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › DAD	0.63	35.0	3.78e-01	100.0%	64.0%
4214525	632.22.1.1 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats › EzrA	0.59	34.0	3.72e-01	100.0%	69.0%
4009028	5069.1.3.0 ↗	alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits	0.55	36.0	3.67e-01	93.4%	66.7%
3171614	5043.1.1.20 ↗	extended segments › Sensor proteins transmembrane domains › Htr2 transmembrane domain-like › Htr2 transmembrane domain-like › TMD_POM152	0.54	32.0	3.53e-01	92.6%	71.0%
3657913	633.4.1.1 ↗	alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor › PMEI	0.54	37.0	3.27e-01	70.5%	65.6%
3683792	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.51	34.0	3.56e-01	91.8%	74.5%