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IVa2

Euk-Vir

Bat_mastadenovirus_WIV10

IVa2__YP_009246379__Bat_mastadenovirus_WIV10__1788432

Identity

Accession:
YP_009246379 ↗
Protein ID:
IVa2
Kingdom:
euk

Quality

76.8 mean pLDDT

Taxonomy

Bamfordvirae› Preplasmiviricota› Pharingeaviricetes› Rowavirales› Adenoviridae› Mastadenovirus› Bat_mastadenovirus_WIV10

TaxID: 1788432

Cluster

View cluster (53 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 78-152_415-442
PDB
Domain cluster: rep: IVa2__YP_009389489__red_squirrel_adenovirus_1__2773314__D63-123_396-424
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02456.22 best Adeno_IVa2 47.3 1.90e-12 71.8% 18.4%
D2 high residues 168-346_395-412
PDB
Domain cluster: rep: IVa2__YP_009361324__Cynomolgus_adenovirus_1__507488__D185-332
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02456.22 best Adeno_IVa2 319.1 4.90e-95 96.5% 50.3%
D3 medium residues 347-394
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02456.22 best Adeno_IVa2 60.2 2.30e-16 100.0% 13.0%
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1mjtB01 3.90.340.10 Alpha Beta › Alpha-Beta Complex › Nitric Oxide Synthase; Chain A, domain 1 › Nitric Oxide Synthase; Chain A, domain 1 0.79 71.0 5.14e-01 100.0% 57.4%
3e3vA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 53.0 5.09e-01 70.8% 60.7%
2khmA01 1.10.10.1350 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Spidroin domain, C-terminal domain 0.77 57.0 4.42e-01 81.2% 52.8%
1j78A05 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.75 59.0 5.56e-01 87.5% 93.3%
2xsgB01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.72 51.0 3.13e-01 75.0% 91.2%
4yt2A02 1.20.120.1300 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hmd, C-terminal helical subdomain 0.71 58.0 4.59e-01 95.8% 61.3%
2oh3A01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.70 52.0 3.69e-01 79.2% 75.0%
2qvwA04 1.10.1520.10 Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain 0.70 56.0 3.99e-01 89.6% 63.4%
1fcqA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.70 52.0 3.15e-01 81.2% 28.3%
2j5iA02 6.10.250.2850 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.70 48.0 5.13e-01 77.1% 92.1%
2px0A01 1.20.120.1380 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar FlhF biosynthesis protein, N domain 0.69 59.0 5.17e-01 97.9% 90.4%
3if8B02 1.20.58.730 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.68 52.0 4.19e-01 87.5% 44.0%
1l5jA03 3.40.1060.10 Alpha Beta › 3-Layer(aba) Sandwich › Aconitase; Domain 2 › Aconitase, Domain 2 0.65 50.0 3.42e-01 83.3% 24.3%
1mhyG02 1.20.1280.30 Mainly Alpha › Up-down Bundle › Monooxygenase › Methane monooxygenase, gamma chain, domain 2 0.65 45.0 3.96e-01 77.1% 47.9%
4qfeK02 1.10.287.2460 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.65 43.0 4.57e-01 72.9% 97.1%
6mh4A03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.64 45.0 3.97e-01 79.2% 57.0%
2iexA02 1.10.12.10 Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 0.64 43.0 4.28e-01 77.1% 66.7%
3deeA01 1.10.150.690 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DUF2063 0.64 51.0 4.35e-01 93.8% 73.3%
7qaqA01 3.40.50.11710 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cyclodipeptide synthase 0.64 47.0 3.13e-01 83.3% 55.9%
1wgfA01 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.60 40.0 3.98e-01 72.9% 64.2%
3tixB03 3.40.50.11490 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.59 46.0 3.40e-01 91.7% 57.0%
1hr5A00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.59 43.0 4.38e-01 79.2% 83.3%
1vf6C00 1.10.287.650 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › L27 domain 0.57 44.0 4.33e-01 85.4% 86.3%
3e21A00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.57 42.0 4.49e-01 91.7% 95.0%
1fc6A01 3.30.750.44 Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › 0.57 44.0 3.70e-01 95.8% 94.9%
2psmA00 1.20.1250.70 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › Interleukin-15/Interleukin-21 0.57 41.0 3.20e-01 81.2% 42.7%
ECOD (31)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3621125 3209.1.1.1 ↗ a+b two layers › RPL28 › RPL28 › RPL28 › Ribosomal_L28e 0.86 64.0 4.54e-01 79.2% 29.6%
1033128 194.1.1.2 ↗ alpha complex topology › Serum albumin-like › Serum albumin-like › Serum albumin-like › VitD-bind_III 0.80 65.0 5.77e-01 91.7% 97.1%
4838968 4957.1.1.0 ↗ a+b complex topology › helical domain in yeast RNA-polymerases › third helical domain in yeast RNA-polymerase II beta-prime subunit › third helical domain in yeast RNA-polymerase II beta-prime subunit 0.77 68.0 5.95e-01 97.9% 74.3%
4946920 182.1.2.1 ↗ alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › Fe-S cluster domain of DNA primase › DNA_primase_lrg 0.76 65.0 4.33e-01 100.0% 37.9%
3529736 3755.3.1.316 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › ATRX_C 0.75 55.0 4.05e-01 79.2% 31.5%
3704045 148.1.3.174 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › RHSP 0.75 60.0 5.02e-01 89.6% 54.1%
5022912 2003.1.1.379 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › HMD 0.75 64.0 3.89e-01 97.9% 21.3%
3632113 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.74 55.0 4.10e-01 81.2% 33.0%
4003844 148.1.3.22 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_5 0.73 60.0 4.74e-01 97.9% 52.7%
3699757 632.18.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › hypothetical protein PA2901 › hypothetical protein PA2901 0.73 49.0 4.33e-01 77.1% 48.6%
3238821 190.1.1.1 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.72 50.0 4.15e-01 72.9% 42.4%
4978129 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.71 53.0 3.12e-01 83.3% 16.8%
3665627 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.70 49.0 3.24e-01 72.9% 19.5%
4930113 102.1.2.37 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › T1RH-like_C 0.70 57.0 4.77e-01 95.8% 76.4%
3674078 75.1.1.1 ↗ beta barrels › Cyclophilin-like › Cyclophilin-like › Cyclophilin-like › Pro_isomerase 0.68 45.0 3.00e-01 72.9% 15.7%
3604252 7000.1.1.0 ↗ alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS 0.67 49.0 4.73e-01 85.4% 70.9%
3648242 108.1.1.11 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › Cullin_binding 0.66 56.0 4.18e-01 100.0% 43.8%
3683174 143.1.1.0 ↗ alpha arrays › PABP domain-like › PABC(PABP) domain › PABC(PABP) domain 0.65 57.0 5.37e-01 100.0% 81.7%
4565026 130.1.1.1 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP 0.65 51.0 4.42e-01 85.4% 62.7%
3363496 7528.1.1.1 ↗ a/b three-layered sandwiches › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains › PGM_PMM_I 0.63 41.0 3.42e-01 72.9% 37.6%
3788485 284.1.3.1 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › SNF5 0.63 54.0 4.45e-01 100.0% 67.8%
4927916 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.62 41.0 3.75e-01 72.9% 52.4%
3730450 109.4.1.356 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans 0.62 50.0 2.93e-01 100.0% 25.8%
4024235 2004.1.1.14 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU 0.62 44.0 2.74e-01 77.1% 16.1%
2712165 192.6.1.0 ↗ alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain 0.62 46.0 4.72e-01 79.2% 93.3%
3036756 397.7.1.0 ↗ few secondary structure elements › Toxic hairpin › Ribosome-inactivating protein luffin P1 › Ribosome-inactivating protein luffin P1 0.61 53.0 4.96e-01 100.0% 81.7%
3286911 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.59 44.0 3.99e-01 85.4% 57.1%
3487862 212.1.1.0 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like 0.58 43.0 2.80e-01 81.2% 51.7%
2323907 212.1.1.24 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Morc6_S5 0.58 45.0 2.92e-01 85.4% 57.7%
3615391 3671.1.1.0 ↗ alpha duplicates or obligate multimers › Translocated intimin receptor Tir extracellular domain › Translocated intimin receptor Tir extracellular domain › Translocated intimin receptor Tir extracellular domain 0.57 40.0 3.68e-01 79.2% 91.4%
4946290 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 45.0 4.15e-01 91.7% 95.4%