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IVa2

Euk-Vir

Bottlenose_dolphin_adenovirus_1

IVa2__YP_009704121__Bottlenose_dolphin_adenovirus_1__1714377

Identity

Accession:: YP_009704121 ↗
Protein ID:: IVa2
Kingdom:: euk

Quality

77.5 mean pLDDT

Taxonomy

Bamfordvirae› Preplasmiviricota› Pharingeaviricetes› Rowavirales› Adenoviridae› Mastadenovirus› Bottlenose_dolphin_adenovirus_1

TaxID: 1714377

Cluster

View cluster (53 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 76-154

PDB

Domain cluster: rep: IVa2__YP_004123737__Murine_adenovirus_2__931972__D86-157_424-439

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02456.22 best	Adeno_IVa2	37.8	1.40e-09	98.7%	19.7%

CATH (13)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3vm9A02	6.10.140.2110	Special › Helix non-globular › Helix Hairpins ›	0.70	41.0	4.75e-01	88.6%	80.7%
4gczA03	1.10.287.130	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain	0.65	41.0	4.55e-01	89.9%	78.5%
2jqqA00	1.20.58.1240	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.60	46.0	3.72e-01	83.5%	90.9%
1aabA00	1.10.30.10	Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain	0.59	48.0	4.72e-01	89.9%	83.1%
2qffA00	1.20.1270.10	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 ›	0.56	40.0	4.14e-01	75.9%	83.8%
3ilkA02	1.10.8.590	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 ›	0.56	41.0	4.42e-01	86.1%	89.7%
2ffjA02	1.10.285.20	Mainly Alpha › Orthogonal Bundle › Glutamate Dehydrogenase; Chain A, domain 3 › Uncharacterised protein PF01937, DUF89, domain 2	0.56	33.0	3.54e-01	75.9%	69.2%
4abmD00	1.10.287.1060	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like	0.55	41.0	4.17e-01	91.1%	79.2%
1imvA02	3.30.497.10	Alpha Beta › 2-Layer Sandwich › Antithrombin; Chain I, domain 2 › Antithrombin, subunit I, domain 2	0.54	37.0	2.79e-01	73.4%	31.1%
1qkrB00	1.20.120.230	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like	0.54	46.0	3.47e-01	92.4%	83.9%
2oyoA02	1.20.1290.10	Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like	0.53	43.0	3.68e-01	88.6%	85.6%
3w0lD02	3.40.50.10490	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1	0.52	42.0	2.86e-01	92.4%	56.1%
1zbsA03	1.10.720.160	Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 ›	0.51	37.0	3.58e-01	77.2%	98.9%

ECOD (20)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3881839	4044.1.1.12 ↗	alpha bundles › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › RH_dom	0.67	47.0	4.48e-01	74.7%	70.5%
5031855	632.15.1.0 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › Staphylococcal complement inhibitor (SCIN) › Staphylococcal complement inhibitor (SCIN)	0.65	45.0	4.52e-01	72.2%	80.0%
3900969	604.1.1.1 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin	0.59	39.0	3.43e-01	89.9%	46.1%
3240235	3922.1.1.0 ↗	alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3	0.58	41.0	3.64e-01	72.2%	80.9%
3863057	632.11.1.3 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like › RH_dom	0.56	47.0	3.91e-01	97.5%	82.6%
4169648	190.1.1.3 ↗	alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box_2	0.56	41.0	4.44e-01	81.0%	93.8%
4251053	4106.1.1.1 ↗	few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC	0.56	42.0	2.89e-01	78.5%	97.3%
4127797	7516.1.1.106 ↗	a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2, PF30648	0.56	38.0	2.55e-01	88.6%	17.5%
3506639	5050.1.1.9 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1	0.56	48.0	3.43e-01	94.9%	47.2%
4015915	190.1.1.3 ↗	alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box_2	0.55	43.0	4.30e-01	83.5%	91.3%
3721449	7076.1.1.0 ↗		0.54	36.0	3.52e-01	89.9%	63.5%
4592663	3978.1.1.1 ↗	alpha complex topology › Integral membrane Acyl-CoA desaturase › Integral membrane Acyl-CoA desaturase › Integral membrane Acyl-CoA desaturase › FA_desaturase	0.53	44.0	3.00e-01	96.2%	40.6%
4034406	632.15.1.1 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › Staphylococcal complement inhibitor (SCIN) › Staphylococcal complement inhibitor (SCIN) › CompInhib_SCIN	0.53	42.0	4.11e-01	89.9%	78.8%
3368923	7064.1.1.1 ↗	alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › VIT1	0.52	39.0	3.12e-01	82.3%	85.0%
3997722	605.1.1.0 ↗	alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase	0.52	40.0	2.83e-01	81.0%	52.1%
3598858	5001.1.1.0 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like	0.52	43.0	2.86e-01	92.4%	56.6%
4018084	605.1.1.0 ↗	alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase	0.51	33.0	3.58e-01	86.1%	75.7%
3775826	4016.1.1.0 ↗	alpha bundles › alpha-helical domain in type II DNA topoisomerase › alpha-helical domain in type II DNA topoisomerase › alpha-helical domain in type II DNA topoisomerase	0.51	37.0	3.18e-01	79.7%	91.0%
3523967	632.8.1.0 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 › alpha-2-Macroglobulin receptor associated protein (RAP) domain 1	0.51	33.0	2.72e-01	86.1%	37.1%
3169125	4015.1.1.1 ↗	alpha complex topology › alpha-helical domain in sec1/munc18-like (SM) proteins › alpha-helical domain in sec1/munc18-like (SM) proteins › alpha-helical domain in sec1/munc18-like (SM) proteins › Sec1	0.51	41.0	2.79e-01	87.3%	70.2%

D2 medium residues 162-409

PDB

Domain cluster: rep: LD_Run2_08_scaffold_35_prodigal-single.1__X__X__00177__D121-323

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02456.22 best	Adeno_IVa2	399.5	1.80e-119	100.0%	67.0%