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Ig7659_scaffold_8_prodigal-single.1__X__X__00021

Bact-Vir

Ig7659_scaffold_8_prodigal-single.1__X__X__00021

Identity

Kingdom:
phage

Quality

93.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 146-222
PDB
Domain cluster: representative
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4tm3A00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.64 44.0 2.74e-01 71.4% 42.3%
4mbrA01 2.60.40.1280 Mainly Beta › Sandwich › Immunoglobulin-like › 0.63 42.0 3.38e-01 90.9% 35.3%
1pjxA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.63 53.0 3.57e-01 96.1% 93.9%
8cukB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.62 50.0 3.29e-01 88.3% 98.5%
2ovrB02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.61 50.0 3.27e-01 89.6% 98.5%
5cqfA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.61 42.0 2.64e-01 71.4% 42.5%
1deuB00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.61 49.0 3.44e-01 89.6% 82.4%
1act000 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.61 49.0 3.59e-01 89.6% 90.8%
5e1vB00 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.60 48.0 3.40e-01 90.9% 88.7%
2lccA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 40.0 4.10e-01 70.1% 76.3%
1b9mA03 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.59 42.0 4.36e-01 100.0% 80.3%
2v3aA03 3.30.390.120 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › 0.56 30.0 3.29e-01 89.6% 60.9%
3cjyA00 2.40.160.210 Mainly Beta › Beta Barrel › Porin › Acyl-CoA thioesterase, double hotdog domain 0.56 45.0 3.25e-01 92.2% 84.6%
3al9A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 40.0 2.51e-01 77.9% 37.7%
3u0aA00 2.40.160.210 Mainly Beta › Beta Barrel › Porin › Acyl-CoA thioesterase, double hotdog domain 0.54 43.0 3.15e-01 92.2% 87.9%
3lbeB00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.54 39.0 3.40e-01 77.9% 89.5%
1wnhA01 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 38.0 3.55e-01 76.6% 76.0%
1e50B00 2.40.250.10 Mainly Beta › Beta Barrel › Polyomavirus Enhancer Binding Protein 2; Chain: A; › Core binding factor, beta subunit 0.53 42.0 3.69e-01 92.2% 84.6%
2y9wC00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.52 40.0 3.36e-01 83.1% 96.3%
4qd4A00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.52 45.0 2.96e-01 100.0% 89.1%
2b3yA05 3.20.19.10 Alpha Beta › Alpha-Beta Barrel › Aconitase; domain 4 › Aconitase, domain 4 0.52 39.0 2.86e-01 83.1% 91.1%
1ei5A01 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.52 42.0 2.87e-01 93.5% 95.0%
3pr6A00 3.30.450.70 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.52 46.0 3.76e-01 100.0% 63.4%
2e5wA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.51 32.0 3.62e-01 70.1% 87.5%
1yemB00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.51 43.0 3.38e-01 93.5% 75.9%
2h36X00 3.30.160.300 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.51 39.0 3.53e-01 83.1% 69.4%
2yf0A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 45.0 4.37e-01 100.0% 87.4%
2qcuB01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.50 45.0 3.22e-01 100.0% 60.3%
1aqcB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 45.0 3.87e-01 100.0% 79.5%
3wwxA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.50 43.0 2.89e-01 100.0% 90.6%
ECOD (33)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5044389 4.26.1.0 beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 0.75 47.0 5.57e-01 98.7% 98.0%
4057742 2.4.1.11 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3 0.69 46.0 5.00e-01 100.0% 81.5%
4329624 2.4.1.12 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3+CysA_C_terminal 0.68 46.0 4.09e-01 100.0% 50.5%
3737927 220.1.1.294 beta barrels › PH domain-like › PH domain-like › PH domain-like › PF26663 0.63 47.0 4.24e-01 81.8% 86.4%
5047051 5.1.4.663 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › SBBP 0.62 51.0 3.29e-01 90.9% 93.0%
3385654 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 43.0 3.69e-01 71.4% 100.0%
4959306 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.62 52.0 3.44e-01 94.8% 92.2%
3720361 5.1.4.32 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nucleoporin_N 0.61 49.0 3.07e-01 89.6% 88.4%
3700827 5.1.5.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.61 50.0 3.20e-01 92.2% 98.0%
3718302 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.60 49.0 3.20e-01 89.6% 93.7%
4505316 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 40.0 4.50e-01 70.1% 90.0%
3281618 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.58 40.0 3.65e-01 70.1% 69.0%
3733191 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.57 42.0 2.74e-01 79.2% 36.3%
3283097 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.57 38.0 3.40e-01 70.1% 55.5%
3978997 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.57 39.0 3.61e-01 70.1% 62.1%
4008035 223.1.1.112 a+b three layers › Profilin-like › sensor domains › sensor domains › PF30417 0.56 40.0 2.73e-01 93.5% 21.1%
4946835 4019.1.1.1 alpha complex topology › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase 0.56 44.0 2.89e-01 87.0% 88.5%
3279470 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.55 37.0 3.58e-01 70.1% 58.9%
3579354 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.55 40.0 3.59e-01 76.6% 81.8%
4952518 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.55 44.0 3.93e-01 98.7% 60.9%
3942912 4.1.1.323 beta barrels › SH3 › SH3 › SH3 › WYL 0.55 38.0 3.69e-01 70.1% 69.4%
3602410 604.1.1.235 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › PF27233 0.54 40.0 2.84e-01 89.6% 24.2%
5075730 3435.1.1.0 a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC 0.53 40.0 3.58e-01 83.1% 83.5%
3230646 517.1.1.1 beta barrels › CBF-like › Core binding factor beta, CBF › Core binding factor beta, CBF › CBF_beta 0.52 43.0 3.77e-01 93.5% 80.0%
4187163 2.4.1.12 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3+CysA_C_terminal 0.52 46.0 4.01e-01 97.4% 80.9%
5021205 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.51 45.0 3.80e-01 97.4% 84.6%
4994388 2.4.1.0 beta barrels › OB-fold › MOP-like › MOP-like 0.51 38.0 3.86e-01 96.1% 78.5%
4268790 2.4.1.12 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3+CysA_C_terminal 0.51 46.0 3.80e-01 97.4% 76.2%
4457428 2.4.1.11 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3 0.51 45.0 4.00e-01 97.4% 70.0%
3706310 331.19.1.0 a+b two layers › TBP-like › Toxin RnlA N-terminal domains › Toxin RnlA N-terminal domains 0.51 41.0 3.76e-01 89.6% 81.0%
5017342 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.51 45.0 3.71e-01 97.4% 76.3%
4123140 2.4.1.12 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3+CysA_C_terminal 0.50 45.0 3.98e-01 97.4% 82.4%
3921576 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.50 44.0 3.66e-01 100.0% 66.4%
D2 medium residues 1-55
PDB
Domain cluster: representative
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3l0mA02 1.20.1280.280 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.85 73.0 6.47e-01 94.5% 88.5%
2kwhA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.75 53.0 5.31e-01 74.5% 100.0%
1pd3A00 1.10.287.230 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.74 52.0 5.33e-01 74.5% 79.6%
1mhyG02 1.20.1280.30 Mainly Alpha › Up-down Bundle › Monooxygenase › Methane monooxygenase, gamma chain, domain 2 0.72 60.0 5.53e-01 96.4% 82.2%
2qsrA01 3.90.1150.50 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Transcription-repair-coupling factor, D7 domain 0.68 57.0 4.23e-01 98.2% 34.8%
1aqlA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.68 47.0 2.68e-01 72.7% 30.8%
3terA00 1.10.287.3550 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.66 45.0 3.58e-01 72.7% 46.2%
1vw4L01 3.90.1030.10 Alpha Beta › Alpha-Beta Complex › 50s Ribosomal Protein L17; Chain: A, › Ribosomal protein L17 0.61 45.0 3.48e-01 81.8% 64.4%
1irxA04 1.10.10.770 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.57 49.0 4.00e-01 98.2% 74.1%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3262288 4030.1.1.0 alpha bundles › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz 0.83 68.0 6.60e-01 96.4% 81.7%
3600492 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.81 72.0 4.51e-01 100.0% 36.1%
3591850 4030.1.1.0 alpha bundles › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz 0.77 68.0 6.46e-01 98.2% 84.6%
4876530 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.63 45.0 3.94e-01 76.4% 56.0%
3720963 2002.1.1.111 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HpcH_HpaI 0.63 52.0 3.36e-01 98.2% 39.3%
3329664 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.59 46.0 3.63e-01 83.6% 93.6%
3967351 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.55 45.0 3.19e-01 89.1% 70.0%
D3 medium residues 56-141
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3mdqA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.67 49.0 4.37e-01 77.9% 86.2%
2p0wA03 1.10.10.390 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.65 37.0 4.50e-01 77.9% 90.7%
3p5nA00 1.10.1760.20 Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › 0.64 47.0 3.81e-01 77.9% 53.0%
4kb2A01 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.56 41.0 3.76e-01 76.7% 87.2%
5ffdA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.55 38.0 3.30e-01 72.1% 86.9%
5jrjA02 3.30.250.10 Alpha Beta › 2-Layer Sandwich › Rec A Protein; domain 2 › RecA protein, C-terminal domain 0.54 31.0 3.57e-01 84.9% 79.7%
3nyiA02 3.30.1180.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › 0.54 45.0 3.91e-01 94.2% 100.0%
3nivC02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.53 42.0 3.69e-01 83.7% 92.7%
2gsvA00 6.10.140.40 Special › Helix non-globular › Helix Hairpins › 0.53 37.0 4.09e-01 74.4% 94.0%
5li7A00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.52 40.0 2.62e-01 82.6% 45.8%
2kt9A01 3.30.390.140 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › 0.52 39.0 3.80e-01 82.6% 96.0%
4bucA02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.52 40.0 3.14e-01 86.0% 84.8%
1ncsA00 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.51 29.0 3.39e-01 96.5% 93.6%
7jt8I01 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.51 41.0 3.13e-01 91.9% 87.4%
3venA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.51 45.0 3.34e-01 98.8% 93.9%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4990936 7516.1.1.79 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glyco_trans_2_3 0.68 52.0 3.28e-01 80.2% 51.9%
3322834 131.1.1.24 alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › tRNA_synt_2f 0.65 52.0 3.79e-01 86.0% 50.4%
3421663 502.1.1.1 a+b two layers › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › RecA_C 0.61 33.0 3.58e-01 84.9% 62.9%
3174398 4967.1.1.6 alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › Intron_maturas2 0.61 46.0 3.63e-01 81.4% 39.4%
4982959 3922.1.1.357 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Auto_anti-p27 0.59 33.0 3.15e-01 73.3% 48.0%
5015776 7512.1.1.30 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 0.56 45.0 3.52e-01 89.5% 100.0%
4452602 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.54 41.0 2.74e-01 81.4% 62.6%
3479534 304.48.1.1 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.54 40.0 2.56e-01 79.1% 23.8%
None 0.53 44.0 3.56e-01 98.8% 86.7%
3217138 7536.1.1.1 a/b three-layered sandwiches › GckA/TtuD-like domain 1 › GckA/TtuD-like domain 1 › GckA/TtuD-like domain 1 › DUF4147 0.52 41.0 3.02e-01 88.4% 91.4%
4558785 2004.1.1.159 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M 0.50 40.0 3.13e-01 89.5% 86.5%