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Ig7659_scaffold_8_prodigal-single.1__X__X__00076
Bact-VirIg7659_scaffold_8_prodigal-single.1__X__X__00076
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 73-190
Domain cluster:
rep: S2_012_000_R2_scaffold_0_prodigal-single.1__X__X__00288__D47-185
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF08805.17 best | PilS | 50.6 | 2.90e-13 | 98.3% | 77.5% |
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3fhvA00 | 3.30.1690.10 | Alpha Beta › 2-Layer Sandwich › TcpA-like pilin › TcpA-like pilin | 0.81 | 77.0 | 6.99e-01 | 100.0% | 86.7% |
| 3s0tA00 | 3.30.1690.10 | Alpha Beta › 2-Layer Sandwich › TcpA-like pilin › TcpA-like pilin | 0.73 | 67.0 | 5.81e-01 | 100.0% | 85.6% |
| 1oqvA00 | 3.30.1690.10 | Alpha Beta › 2-Layer Sandwich › TcpA-like pilin › TcpA-like pilin | 0.72 | 66.0 | 5.79e-01 | 100.0% | 85.4% |
| 2qkdA01 | 2.20.25.420 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain | 0.65 | 26.0 | 4.16e-01 | 72.9% | 95.8% |
| 1yb3A00 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.65 | 58.0 | 5.21e-01 | 99.2% | 81.8% |
| 6ya6A01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.63 | 41.0 | 4.43e-01 | 95.8% | 78.6% |
| 4bhqA00 | 3.30.70.2830 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.62 | 45.0 | 4.74e-01 | 76.3% | 98.2% |
| 6gmhK00 | 3.30.1360.10 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit | 0.62 | 34.0 | 3.53e-01 | 78.8% | 54.8% |
| 5xogK00 | 3.30.1360.10 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit | 0.61 | 35.0 | 3.56e-01 | 78.8% | 56.6% |
| 1bdfA01 | 3.30.1360.10 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit | 0.60 | 37.0 | 3.97e-01 | 70.3% | 69.8% |
| 1uv7A00 | 3.30.1360.100 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › General secretion pathway protein M, EpsM | 0.58 | 36.0 | 4.40e-01 | 89.8% | 97.4% |
| 5suhB01 | 3.30.70.1710 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › BMC (bacterial microcompartment) domain | 0.58 | 36.0 | 3.92e-01 | 70.3% | 74.7% |
| 3bcwA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.57 | 41.0 | 4.32e-01 | 75.4% | 99.0% |
| 2o1qA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.53 | 38.0 | 3.71e-01 | 73.7% | 79.5% |
| 4jg9A00 | 2.60.40.3830 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.52 | 39.0 | 3.72e-01 | 85.6% | 67.6% |
ECOD (22)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3517458 | 274.1.1.10 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits › PilS | 0.86 | 71.0 | 7.02e-01 | 100.0% | 81.6% |
| 4125222 | 274.1.1.6 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits › Bundlin | 0.80 | 76.0 | 6.68e-01 | 100.0% | 77.9% |
| 149275 | 274.1.1.7 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits › TcpA | 0.73 | 67.0 | 5.81e-01 | 100.0% | 85.6% |
| 4617348 | 274.1.1.7 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits › TcpA | 0.72 | 66.0 | 5.71e-01 | 100.0% | 81.6% |
| 6675 | 274.1.1.10 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits › PilS | 0.67 | 61.0 | 5.54e-01 | 100.0% | 85.9% |
| 6656 | 241.12.1.2 ↗ | a+b two layers › Type III secretory system chaperone-like › YktB/PF0168-like › YktB/PF0168-like › DUF3201 | 0.65 | 58.0 | 5.20e-01 | 99.2% | 81.3% |
| 4485368 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.61 | 38.0 | 3.01e-01 | 96.6% | 31.1% |
| 3950275 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.60 | 36.0 | 4.08e-01 | 84.7% | 81.2% |
| 3282808 | 241.11.1.5 ↗ | a+b two layers › Type III secretory system chaperone-like › YjbR-like › YjbR-like › DUF5655 | 0.59 | 44.0 | 4.38e-01 | 97.5% | 74.2% |
| 3264554 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.59 | 38.0 | 2.73e-01 | 93.2% | 22.0% |
| 3164985 | 310.3.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related | 0.57 | 39.0 | 3.59e-01 | 97.5% | 51.9% |
| 3273079 | 9.4.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains | 0.54 | 33.0 | 3.69e-01 | 91.5% | 78.7% |
| 3215615 | 11.1.1.532 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C6 | 0.53 | 34.0 | 3.53e-01 | 98.3% | 68.2% |
| 4433028 | 329.1.1.1 ↗ | a+b two layers › Prokaryotic AspRS, insert domain › Prokaryotic AspRS, insert domain › Prokaryotic AspRS, insert domain › GAD | 0.53 | 37.0 | 3.52e-01 | 71.2% | 77.1% |
| 5058907 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 39.0 | 3.95e-01 | 97.5% | 78.3% |
| 3969011 | 10.12.1.27 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_3 | 0.53 | 37.0 | 3.83e-01 | 73.7% | 92.2% |
| 3692209 | 244.1.1.0 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C | 0.52 | 43.0 | 3.38e-01 | 91.5% | 93.6% |
| 3505674 | 11.1.1.44 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Alpha_adaptinC2 | 0.52 | 36.0 | 3.86e-01 | 78.0% | 81.9% |
| 5027561 | 310.3.1.3 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related › PilN | 0.52 | 40.0 | 3.94e-01 | 90.7% | 76.0% |
| 3226828 | 10.4.1.0 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain | 0.51 | 41.0 | 4.07e-01 | 85.6% | 90.4% |
| 4942867 | 11.4.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Antigen MPT63/MPB63 (immunoprotective extracellular protein) › Antigen MPT63/MPB63 (immunoprotective extracellular protein) | 0.51 | 41.0 | 3.83e-01 | 97.5% | 68.0% |
| 1397120 | 304.54.1.1 ↗ | a+b two layers › Alpha-beta plaits › CcmK-like › CcmK-like › BMC | 0.51 | 35.0 | 3.50e-01 | 72.9% | 70.3% |