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Ig7659_scaffold_8_prodigal-single.1__X__X__00092

Bact-Vir

Ig7659_scaffold_8_prodigal-single.1__X__X__00092

Identity

Kingdom:
phage

Quality

53.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 200-284_353-373
PDB
Domain cluster: rep: S2_012_000_R2_scaffold_0_prodigal-single.1__X__X__01094__D235-314_388-405
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3jqoA01 2.40.128.260 Mainly Beta › Beta Barrel › Lipocalin › Type IV secretion system, VirB10/TraB/TrbI 0.87 82.0 7.38e-01 100.0% 87.1%
2bhvB01 2.40.128.260 Mainly Beta › Beta Barrel › Lipocalin › Type IV secretion system, VirB10/TraB/TrbI 0.77 72.0 6.18e-01 100.0% 87.0%
4bboA00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.61 46.0 4.55e-01 97.2% 74.3%
1jmxA02 2.40.128.120 Mainly Beta › Beta Barrel › Lipocalin › Quinohemoprotein amine dehydrogenase alpha subunit, domain 2 0.60 45.0 4.50e-01 99.1% 77.1%
4nyqA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.57 40.0 3.59e-01 93.4% 49.7%
4jglA00 2.40.128.530 Mainly Beta › Beta Barrel › Lipocalin › 0.57 45.0 4.02e-01 84.9% 77.6%
6oodA01 2.40.480.10 Mainly Beta › Beta Barrel › AOC barrel-like › Allene oxide cyclase-like 0.57 50.0 4.53e-01 100.0% 98.6%
3jv1A00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.56 42.0 3.58e-01 81.1% 61.5%
4rlcA00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.55 49.0 4.53e-01 98.1% 82.2%
1aqbA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 43.0 3.65e-01 91.5% 50.9%
1ksiA03 2.70.98.20 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain 0.54 44.0 2.95e-01 88.7% 68.0%
3v8uA04 2.40.160.90 Mainly Beta › Beta Barrel › Porin › 0.52 46.0 4.25e-01 100.0% 80.9%
2h36X00 3.30.160.300 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.52 37.0 3.73e-01 99.1% 73.1%
1ikpA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 37.0 3.03e-01 78.3% 58.3%
4qrlA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.51 36.0 3.62e-01 86.8% 70.9%
1h91A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 37.0 3.20e-01 78.3% 58.3%
1x9yA01 3.10.500.10 Alpha Beta › Roll › prostaphopain b, domain 1 › Staphopain proregion domain 0.50 39.0 3.41e-01 84.9% 58.2%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3519781 517.2.1.0 ↗ beta barrels › CBF-like › TraF › TraF 0.93 89.0 7.10e-01 100.0% 94.7%
2798302 517.2.1.1 ↗ beta barrels › CBF-like › TraF › TraF › TrbI 0.84 64.0 6.22e-01 80.2% 76.1%
1113926 517.2.1.1 ↗ beta barrels › CBF-like › TraF › TraF › TrbI 0.78 73.0 5.86e-01 100.0% 89.6%
4961667 5084.1.1.45 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › PF26421 0.60 45.0 4.41e-01 95.3% 73.0%
5020511 3338.2.1.0 ↗ a+b two layers › Fragilysin-3 prodomain-like › Type II secretion chaperone CpaB › Type II secretion chaperone CpaB 0.60 43.0 4.21e-01 99.1% 68.7%
3454923 9.13.1.1 ↗ beta barrels › Lipocalins/Streptavidin › AOC barrel-like › AOC barrel-like › Dirigent 0.59 52.0 4.60e-01 98.1% 96.8%
3431804 9.13.1.1 ↗ beta barrels › Lipocalins/Streptavidin › AOC barrel-like › AOC barrel-like › Dirigent 0.58 51.0 4.40e-01 98.1% 94.5%
3642993 9.13.1.1 ↗ beta barrels › Lipocalins/Streptavidin › AOC barrel-like › AOC barrel-like › Dirigent 0.57 49.0 4.33e-01 96.2% 100.0%
224086 9.18.1.0 ↗ beta barrels › Lipocalins/Streptavidin 0.57 45.0 4.02e-01 84.9% 77.6%
4114942 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.56 46.0 3.92e-01 94.3% 53.7%
3671305 9.13.1.1 ↗ beta barrels › Lipocalins/Streptavidin › AOC barrel-like › AOC barrel-like › Dirigent 0.56 49.0 4.43e-01 99.1% 91.3%
3450526 9.13.1.1 ↗ beta barrels › Lipocalins/Streptavidin › AOC barrel-like › AOC barrel-like › Dirigent 0.56 50.0 4.42e-01 100.0% 94.8%
3471722 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.55 39.0 3.80e-01 95.3% 67.8%
3664762 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.54 44.0 3.67e-01 85.8% 51.4%
3704753 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.54 40.0 3.15e-01 80.2% 64.2%
3509731 71.1.1.19 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › PF25898 0.53 41.0 3.24e-01 82.1% 41.4%
3288440 331.3.1.11 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc2 0.52 46.0 4.19e-01 99.1% 78.6%
5003766 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.51 41.0 3.82e-01 85.8% 73.8%
5007185 71.1.1.0 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.51 41.0 3.79e-01 91.5% 86.2%
840 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.50 37.0 3.17e-01 78.3% 58.0%
3738504 331.4.1.0 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.50 36.0 3.60e-01 97.2% 72.7%