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Ig7659_scaffold_8_prodigal-single.1__X__X__00103
Bact-VirIg7659_scaffold_8_prodigal-single.1__X__X__00103
Identity
- Kingdom:
- phage
Quality
90.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-54_96-186
Domain cluster:
rep: IMGVR_UViG_3300014887_000003-3300014887-Ga0180302_1000002739__D2-143
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01751.29 best | Toprim | 34.9 | 2.00e-08 | 87.1% | 88.5% |
CATH (46)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1i7dA01 | 3.40.50.140 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.79 | 76.0 | 7.30e-01 | 100.0% | 97.4% |
| 1gkuB05 | 3.40.50.140 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.77 | 63.0 | 6.70e-01 | 100.0% | 98.3% |
| 4cgyA01 | 3.40.50.140 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.73 | 68.0 | 6.27e-01 | 99.3% | 91.5% |
| 5uj1A01 | 3.40.50.140 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.64 | 59.0 | 5.88e-01 | 100.0% | 94.5% |
| 4pyrA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.62 | 41.0 | 4.44e-01 | 100.0% | 78.3% |
| 3iprA00 | 3.40.50.510 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphotransferase system, mannose-type IIA component | 0.62 | 50.0 | 5.08e-01 | 100.0% | 88.3% |
| 4j1qA00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.61 | 51.0 | 3.60e-01 | 100.0% | 30.0% |
| 2olsA04 | 3.20.20.60 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains | 0.61 | 47.0 | 3.69e-01 | 82.9% | 92.0% |
| 3fj1A02 | 3.40.50.10490 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 | 0.60 | 46.0 | 4.71e-01 | 97.1% | 83.1% |
| 3fijC00 | 3.40.50.880 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain | 0.59 | 52.0 | 4.48e-01 | 97.1% | 95.9% |
| 4e3zB00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.58 | 52.0 | 4.49e-01 | 100.0% | 95.2% |
| 2iufA03 | 3.40.50.880 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain | 0.58 | 52.0 | 5.00e-01 | 97.9% | 86.4% |
| 4m8kA00 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.58 | 51.0 | 4.52e-01 | 98.6% | 93.4% |
| 4e69A00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.58 | 51.0 | 3.99e-01 | 97.9% | 89.0% |
| 1mkyA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.57 | 52.0 | 5.06e-01 | 98.6% | 91.7% |
| 4ei7A02 | 3.40.50.1440 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Tubulin/FtsZ, GTPase domain | 0.57 | 52.0 | 4.38e-01 | 100.0% | 97.9% |
| 8jx6B01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.57 | 42.0 | 3.73e-01 | 76.4% | 77.0% |
| 5dn8A02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.56 | 51.0 | 4.88e-01 | 98.6% | 95.7% |
| 5karA01 | 3.60.21.10 | Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases | 0.56 | 48.0 | 3.48e-01 | 94.3% | 84.6% |
| 3dciA00 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.56 | 50.0 | 4.44e-01 | 99.3% | 98.6% |
| 2afcA00 | 3.40.220.10 | Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 | 0.56 | 49.0 | 4.82e-01 | 97.9% | 88.2% |
| 3jw8B00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.56 | 49.0 | 3.98e-01 | 98.6% | 88.1% |
| 2fwrA03 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.55 | 39.0 | 3.48e-01 | 87.1% | 51.3% |
| 3upuA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.55 | 42.0 | 3.92e-01 | 100.0% | 64.2% |
| 5aunB01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.55 | 50.0 | 4.26e-01 | 99.3% | 82.9% |
| 3kzpA00 | 3.20.20.450 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain | 0.54 | 39.0 | 3.36e-01 | 75.0% | 95.7% |
| 3cm0A00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.54 | 48.0 | 4.39e-01 | 97.9% | 97.3% |
| 3vbcA00 | 3.40.50.11530 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.54 | 43.0 | 4.41e-01 | 97.1% | 89.0% |
| 1o6cB01 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.54 | 48.0 | 4.13e-01 | 97.9% | 95.4% |
| 6sj3B01 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.54 | 46.0 | 3.60e-01 | 95.7% | 87.0% |
| 1kcxA02 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.53 | 46.0 | 3.47e-01 | 97.9% | 92.0% |
| 2q02A00 | 3.20.20.150 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes | 0.53 | 42.0 | 3.39e-01 | 84.3% | 76.1% |
| 4f1jA00 | 3.40.50.410 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › von Willebrand factor, type A domain | 0.53 | 46.0 | 4.17e-01 | 98.6% | 94.5% |
| 1gkpA02 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.53 | 46.0 | 3.47e-01 | 96.4% | 92.4% |
| 1peqA02 | 3.20.70.20 | Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › | 0.53 | 43.0 | 3.03e-01 | 88.6% | 98.1% |
| 4fypB00 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.53 | 40.0 | 3.47e-01 | 80.0% | 77.4% |
| 5hj9A00 | 3.40.800.10 | Alpha Beta › 3-Layer(aba) Sandwich › Arginase; Chain A › Ureohydrolase domain | 0.53 | 47.0 | 3.65e-01 | 98.6% | 95.8% |
| 4nesA01 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.52 | 46.0 | 4.17e-01 | 98.6% | 99.5% |
| 3nyiB01 | 3.40.50.10170 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.52 | 47.0 | 4.57e-01 | 98.6% | 96.2% |
| 4q6jB00 | 3.20.20.450 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain | 0.52 | 38.0 | 3.20e-01 | 76.4% | 84.6% |
| 5vanA02 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.52 | 43.0 | 3.13e-01 | 90.0% | 95.2% |
| 3rptA00 | 3.20.20.40 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › 1, 4-beta cellobiohydrolase | 0.51 | 42.0 | 3.50e-01 | 88.6% | 70.8% |
| 4hylA00 | 3.30.750.24 | Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › STAS domain | 0.51 | 38.0 | 4.13e-01 | 92.9% | 96.5% |
| 1rzuA02 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.51 | 46.0 | 4.07e-01 | 100.0% | 77.0% |
| 2x6qA02 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.51 | 46.0 | 4.11e-01 | 100.0% | 80.2% |
| 4ntcA02 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.50 | 39.0 | 4.11e-01 | 89.3% | 94.4% |
ECOD (65)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| None | — | 0.83 | 74.0 | 7.71e-01 | 97.9% | 99.2% | |
| None | — | 0.79 | 77.0 | 7.37e-01 | 100.0% | 98.1% | |
| 3944064 | 2006.1.3.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim | 0.79 | 76.0 | 6.40e-01 | 100.0% | 70.7% |
| 4402761 | 2006.1.3.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim | 0.79 | 74.0 | 7.15e-01 | 98.6% | 97.4% |
| 4948253 | 2006.1.3.30 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Topoisom_bac | 0.79 | 75.0 | 5.10e-01 | 100.0% | 35.7% |
| 4938947 | 2006.1.3.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim | 0.79 | 71.0 | 6.71e-01 | 100.0% | 81.9% |
| 3590579 | 2006.1.3.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim | 0.78 | 74.0 | 7.13e-01 | 98.6% | 98.7% |
| 4981101 | 2006.1.3.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain | 0.78 | 71.0 | 7.31e-01 | 98.6% | 100.0% |
| 5071480 | 2006.1.3.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim | 0.77 | 73.0 | 6.85e-01 | 100.0% | 93.9% |
| 4990152 | 2006.1.3.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim | 0.77 | 71.0 | 7.26e-01 | 100.0% | 100.0% |
| 4971254 | 2006.1.3.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain | 0.76 | 68.0 | 7.06e-01 | 97.1% | 100.0% |
| 4976525 | 2006.1.3.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain | 0.75 | 72.0 | 6.84e-01 | 100.0% | 100.0% |
| 3440696 | 2006.1.3.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim | 0.75 | 71.0 | 6.98e-01 | 100.0% | 96.0% |
| 5008810 | 2006.1.3.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim | 0.74 | 65.0 | 6.60e-01 | 100.0% | 94.8% |
| 5001224 | 2006.1.3.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain | 0.74 | 70.0 | 6.16e-01 | 100.0% | 98.5% |
| 5000445 | 2006.1.3.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim | 0.74 | 69.0 | 6.52e-01 | 98.6% | 92.7% |
| 4418350 | 2006.1.3.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim | 0.74 | 69.0 | 6.09e-01 | 100.0% | 96.9% |
| 4283078 | 2006.1.3.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim | 0.74 | 70.0 | 6.73e-01 | 100.0% | 97.4% |
| 4930519 | 2006.1.3.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim | 0.73 | 70.0 | 6.70e-01 | 100.0% | 98.7% |
| 5036017 | 2006.1.3.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim | 0.73 | 68.0 | 5.69e-01 | 100.0% | 73.9% |
| 3692627 | 2006.1.3.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim | 0.73 | 69.0 | 6.17e-01 | 99.3% | 97.3% |
| 1144578 | 2006.1.3.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim | 0.73 | 68.0 | 6.23e-01 | 98.6% | 91.4% |
| 5003642 | 101.1.2.19 ↗ | alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac | 0.73 | 69.0 | 5.05e-01 | 100.0% | 46.0% |
| 4950121 | 211.1.1.5 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase_2 | 0.72 | 30.0 | 4.55e-01 | 72.1% | 91.7% |
| 3594771 | 2006.1.3.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain | 0.72 | 67.0 | 6.43e-01 | 99.3% | 98.1% |
| 3838295 | 2006.1.3.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim | 0.71 | 57.0 | 6.10e-01 | 99.3% | 97.5% |
| 4392313 | 2006.1.3.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim | 0.70 | 66.0 | 6.35e-01 | 100.0% | 97.4% |
| 1713024 | 211.1.1.24 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Ble-like_N | 0.70 | 31.0 | 4.49e-01 | 83.6% | 92.2% |
| 5005178 | 2006.1.3.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain | 0.69 | 64.0 | 6.28e-01 | 97.9% | 98.0% |
| 4009532 | 2004.1.1.73 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 | 0.66 | 60.0 | 4.77e-01 | 98.6% | 63.6% |
| 3614788 | 2006.1.3.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim | 0.65 | 61.0 | 4.43e-01 | 100.0% | 49.4% |
| 3402748 | 2004.1.1.16 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Arf | 0.65 | 59.0 | 5.49e-01 | 98.6% | 90.3% |
| 3165571 | 2006.1.3.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim | 0.64 | 61.0 | 5.71e-01 | 100.0% | 97.6% |
| 3700326 | 2006.1.3.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim | 0.64 | 59.0 | 5.86e-01 | 97.9% | 96.6% |
| 3953940 | 2006.1.3.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim | 0.63 | 58.0 | 5.71e-01 | 99.3% | 91.3% |
| 4008675 | 2004.1.1.243 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PduV-EutP | 0.61 | 34.0 | 4.02e-01 | 98.6% | 81.1% |
| 3251090 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.61 | 40.0 | 3.86e-01 | 92.9% | 58.7% |
| 1308667 | 2002.1.1.105 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PEP-utilizers_C | 0.61 | 47.0 | 3.69e-01 | 82.9% | 91.7% |
| 3841157 | 2004.1.1.24 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom,Helicase_C | 0.58 | 45.0 | 3.60e-01 | 82.1% | 77.8% |
| 4466206 | 2006.1.3.7 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim_4 | 0.57 | 45.0 | 4.81e-01 | 97.9% | 92.8% |
| 5055617 | 2002.1.1.60 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 | 0.57 | 45.0 | 3.69e-01 | 85.0% | 95.5% |
| 4505098 | 2008.1.1.149 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PF30140 | 0.55 | 44.0 | 4.41e-01 | 92.1% | 86.4% |
| 4281432 | 2008.1.1.149 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PF30140 | 0.55 | 43.0 | 4.44e-01 | 92.1% | 89.6% |
| 4992752 | 7512.1.1.30 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 | 0.54 | 47.0 | 4.42e-01 | 95.0% | 95.4% |
| 3744600 | 2003.6.1.5 ↗ | a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › Phos_pyr_kin | 0.54 | 49.0 | 3.76e-01 | 98.6% | 73.5% |
| 3600748 | 7579.1.1.9 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Esterase | 0.54 | 47.0 | 3.92e-01 | 97.9% | 80.0% |
| 3059318 | 2004.1.1.205 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_30 | 0.54 | 44.0 | 3.96e-01 | 100.0% | 63.1% |
| 3958856 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.54 | 47.0 | 3.50e-01 | 97.9% | 87.5% |
| 3289519 | 2002.1.1.167 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DHOase | 0.53 | 47.0 | 3.48e-01 | 97.9% | 85.2% |
| 4027084 | 2006.1.6.12 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA_2 | 0.53 | 47.0 | 4.33e-01 | 98.6% | 99.5% |
| 3988559 | 2484.1.1.144 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DEDD_Tnp_IS110 | 0.53 | 42.0 | 4.46e-01 | 100.0% | 98.3% |
| 5034341 | 2007.1.9.12 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) › PF30415 | 0.53 | 43.0 | 3.79e-01 | 97.1% | 58.1% |
| 3172133 | 7514.1.1.3 ↗ | a/b three-layered sandwiches › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › NAD_binding_6 | 0.52 | 42.0 | 4.02e-01 | 86.4% | 93.9% |
| 5026968 | 7512.1.1.8 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Epimerase_2 | 0.52 | 43.0 | 3.88e-01 | 88.6% | 88.2% |
| 4460394 | 2002.1.1.116 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PdxJ | 0.52 | 42.0 | 3.49e-01 | 85.0% | 94.6% |
| 5067176 | 2004.1.1.66 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase_2 | 0.52 | 41.0 | 3.67e-01 | 86.4% | 87.1% |
| 5050443 | 2002.1.1.96 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › S-methyl_trans | 0.51 | 44.0 | 3.57e-01 | 96.4% | 99.0% |
| 5057587 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.51 | 45.0 | 3.50e-01 | 99.3% | 99.4% |
| 4970773 | 2002.1.1.83 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Amidohydro_1 | 0.51 | 45.0 | 3.34e-01 | 98.6% | 83.3% |
| 1347962 | 2500.1.1.5 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › NRDD | 0.51 | 39.0 | 2.99e-01 | 80.0% | 61.1% |
| 4967919 | 7512.1.1.31 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_trans_4_4 | 0.51 | 39.0 | 3.90e-01 | 82.9% | 100.0% |
| 5060857 | 2004.1.1.194 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C_2 | 0.51 | 46.0 | 3.94e-01 | 98.6% | 77.3% |
| 3744746 | 2007.1.3.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like | 0.51 | 45.0 | 4.51e-01 | 100.0% | 97.9% |
| 4240120 | 2002.1.1.102 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PHP | 0.51 | 44.0 | 3.66e-01 | 98.6% | 90.6% |
| 4208424 | 2002.4.1.1 ↗ | a/b barrels › TIM beta/alpha-barrel › Nicotinate/Quinolinate PRTase C-terminal domain-like › Nicotinate/Quinolinate PRTase C-terminal domain-like › NAPRTase | 0.50 | 41.0 | 3.30e-01 | 91.4% | 46.2% |
D2
high
residues 324-441
Domain cluster:
rep: KX077896.1__ANM47700.1__X__00069__D72-191
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01131.26 best | Topoisom_bac | 66.8 | 2.60e-18 | 100.0% | 29.6% |
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1i7dA04 | 1.10.290.10 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; domain 4 › Topoisomerase I, domain 4 | 0.93 | 90.0 | 8.76e-01 | 100.0% | 95.3% |
| 6k8nA02 | 1.10.290.10 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; domain 4 › Topoisomerase I, domain 4 | 0.85 | 80.0 | 8.06e-01 | 100.0% | 100.0% |
| 4cgyA04 | 1.10.290.10 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; domain 4 › Topoisomerase I, domain 4 | 0.84 | 80.0 | 7.82e-01 | 100.0% | 94.4% |
| 1gkuB08 | 1.10.290.10 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; domain 4 › Topoisomerase I, domain 4 | 0.77 | 71.0 | 7.14e-01 | 99.2% | 96.6% |
| 2ek5B00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.70 | 33.0 | 3.46e-01 | 83.9% | 49.5% |
| 3ez2A01 | 1.10.1660.30 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.56 | 29.0 | 3.60e-01 | 87.3% | 81.4% |
ECOD (23)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4319228 | 101.1.2.19 ↗ | alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac | 0.94 | 90.0 | 8.70e-01 | 100.0% | 93.8% |
| 4602152 | 101.1.2.19 ↗ | alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac | 0.94 | 89.0 | 8.60e-01 | 99.2% | 95.4% |
| 4466579 | 101.1.2.19 ↗ | alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac | 0.93 | 89.0 | 8.59e-01 | 100.0% | 94.6% |
| 3590144 | 101.1.2.19 ↗ | alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac | 0.92 | 88.0 | 8.46e-01 | 100.0% | 94.6% |
| 3590582 | 101.1.2.19 ↗ | alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac | 0.91 | 87.0 | 8.35e-01 | 100.0% | 94.6% |
| 4987355 | 101.1.2.19 ↗ | alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac | 0.87 | 83.0 | 8.18e-01 | 100.0% | 94.4% |
| 4943299 | 101.1.2.19 ↗ | alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac | 0.87 | 83.0 | 8.15e-01 | 100.0% | 95.2% |
| 3176697 | 101.1.2.19 ↗ | alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac | 0.86 | 82.0 | 7.58e-01 | 100.0% | 93.8% |
| 5021952 | 101.1.2.19 ↗ | alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac | 0.86 | 82.0 | 7.80e-01 | 100.0% | 91.1% |
| 4363124 | 101.1.2.19 ↗ | alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac | 0.86 | 82.0 | 7.79e-01 | 100.0% | 91.1% |
| 4971255 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.86 | 81.0 | 7.95e-01 | 99.2% | 96.8% |
| 4960284 | 101.1.2.19 ↗ | alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac | 0.86 | 82.0 | 8.01e-01 | 100.0% | 94.4% |
| 4981102 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.86 | 80.0 | 7.85e-01 | 100.0% | 92.8% |
| 5051951 | 101.1.2.19 ↗ | alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac | 0.85 | 81.0 | 7.78e-01 | 100.0% | 93.8% |
| 4976526 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.85 | 80.0 | 7.71e-01 | 99.2% | 97.7% |
| 3305633 | 101.1.2.19 ↗ | alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac | 0.85 | 80.0 | 7.89e-01 | 100.0% | 94.4% |
| 5000123 | 101.1.2.19 ↗ | alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac | 0.85 | 80.0 | 7.62e-01 | 100.0% | 94.8% |
| 5005179 | 101.1.2.19 ↗ | alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac | 0.83 | 79.0 | 7.73e-01 | 100.0% | 94.4% |
| 3756243 | 101.1.2.19 ↗ | alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac | 0.82 | 77.0 | 7.72e-01 | 100.0% | 97.5% |
| 5078217 | 101.1.2.19 ↗ | alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac | 0.82 | 56.0 | 6.19e-01 | 79.7% | 86.3% |
| 3612398 | 101.1.2.19 ↗ | alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac | 0.78 | 71.0 | 7.11e-01 | 100.0% | 93.3% |
| 3177441 | 101.1.2.53 ↗ | alpha arrays › HTH › HTH › winged helix domain › Mnd1 | 0.73 | 34.0 | 3.10e-01 | 80.5% | 34.7% |
| 4213215 | 150.3.1.3 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › 4-helical cytokines › 4-helical cytokine › IL6 | 0.51 | 44.0 | 3.86e-01 | 94.9% | 84.0% |
D3
medium
residues 254-313_449-466
Domain cluster:
representative
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4cgyA03 | 2.70.20.10 | Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Topoisomerase I, domain 3 | 0.67 | 61.0 | 5.08e-01 | 100.0% | 60.2% |
| 2n54B00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.56 | 36.0 | 3.89e-01 | 96.2% | 77.3% |
| 3r6aB00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.56 | 35.0 | 3.01e-01 | 100.0% | 40.2% |
| 2gu3A01 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.56 | 35.0 | 3.73e-01 | 92.3% | 75.4% |
| 1zylA01 | 3.30.200.70 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › | 0.55 | 31.0 | 3.29e-01 | 93.6% | 60.0% |
| 3onrJ00 | 3.30.1660.10 | Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › Flavin-binding protein dodecin | 0.55 | 33.0 | 3.51e-01 | 80.8% | 67.6% |
| 6htnA01 | 2.120.10.70 | Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin | 0.55 | 40.0 | 3.34e-01 | 97.4% | 43.8% |
| 3f3fD01 | 2.20.25.500 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.55 | 33.0 | 3.85e-01 | 92.3% | 92.2% |
| 3v7dD02 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.55 | 37.0 | 2.39e-01 | 96.2% | 15.6% |
| 1y9lA00 | 2.40.128.230 | Mainly Beta › Beta Barrel › Lipocalin › Pilot protein MxiM | 0.55 | 44.0 | 4.02e-01 | 91.0% | 99.1% |
| 6gmhH01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.54 | 45.0 | 3.66e-01 | 89.7% | 85.4% |
| 2la7A01 | 2.40.128.270 | Mainly Beta › Beta Barrel › Lipocalin › | 0.54 | 44.0 | 3.82e-01 | 93.6% | 94.5% |
| 1e8oA00 | 3.30.720.10 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 | 0.54 | 36.0 | 3.67e-01 | 100.0% | 71.6% |
| 4g6qA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 33.0 | 3.28e-01 | 73.1% | 55.2% |
| 2it1A03 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.53 | 31.0 | 3.51e-01 | 100.0% | 73.8% |
| 2c9oB02 | 2.40.50.360 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RuvBL1 DNA/RNA binding domain | 0.53 | 34.0 | 3.01e-01 | 70.5% | 44.2% |
| 3h0gH00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.53 | 44.0 | 3.80e-01 | 92.3% | 83.9% |
| 3fwlA02 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.51 | 46.0 | 2.91e-01 | 100.0% | 77.7% |
| 5dmhB02 | 3.40.980.20 | Alpha Beta › 3-Layer(aba) Sandwich › Molybdenum Cofactor Biosythetic Enzyme; Chain A › Four-carbon acid sugar kinase, nucleotide binding domain | 0.51 | 37.0 | 2.96e-01 | 79.5% | 86.7% |
| 1shyB01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.51 | 44.0 | 2.74e-01 | 96.2% | 18.0% |
| 2cc6A00 | 3.30.1660.10 | Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › Flavin-binding protein dodecin | 0.51 | 31.0 | 3.38e-01 | 82.1% | 73.4% |
| 3n8hA02 | 3.30.1300.10 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › Pantoate-beta-alanine ligase, C-terminal domain | 0.50 | 44.0 | 4.49e-01 | 96.2% | 100.0% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4542803 | 264.2.1.0 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain | 0.79 | 73.0 | 5.77e-01 | 100.0% | 60.7% |
| 4960285 | 264.2.1.0 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain | 0.77 | 62.0 | 5.36e-01 | 100.0% | 57.4% |
| 3628875 | 264.2.1.0 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain | 0.77 | 62.0 | 5.83e-01 | 100.0% | 71.6% |
| 4930521 | 264.2.1.0 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain | 0.76 | 61.0 | 5.29e-01 | 100.0% | 57.4% |
| 5036765 | 264.2.1.0 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain | 0.75 | 61.0 | 5.61e-01 | 100.0% | 68.0% |
| 4987354 | 264.2.1.0 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain | 0.75 | 61.0 | 5.59e-01 | 100.0% | 68.0% |
| 3194676 | 264.2.1.0 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain | 0.74 | 60.0 | 5.71e-01 | 100.0% | 74.4% |
| 5051952 | 264.2.1.0 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain | 0.74 | 61.0 | 5.39e-01 | 100.0% | 62.7% |
| 3590914 | 264.2.1.0 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain | 0.73 | 61.0 | 5.42e-01 | 100.0% | 64.5% |
| 4150541 | 304.15.1.0 ↗ | a+b two layers › Alpha-beta plaits › Viral DNA-binding domain › Viral DNA-binding domain | 0.56 | 45.0 | 4.14e-01 | 89.7% | 99.0% |
| 5048435 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.54 | 45.0 | 3.91e-01 | 91.0% | 83.3% |
| 5014689 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.53 | 33.0 | 3.65e-01 | 92.3% | 81.7% |
| 4991268 | 7523.1.1.0 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II | 0.52 | 43.0 | 3.43e-01 | 94.9% | 83.4% |
| 3704885 | 3100.1.1.0 ↗ | extended segments › Synaptobrevin › Synaptobrevin › Synaptobrevin | 0.50 | 44.0 | 3.29e-01 | 100.0% | 66.2% |