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Ig7659_scaffold_8_prodigal-single.1__X__X__00112

Bact-Vir

Ig7659_scaffold_8_prodigal-single.1__X__X__00112

Identity

Kingdom:
phage

Quality

86.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 158-314
PDB
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2r8qA00 1.10.1300.10 Mainly Alpha › Orthogonal Bundle › Catalytic domain of cyclic nucleotide phosphodiesterase 4b2b › 3'5'-cyclic nucleotide phosphodiesterase, catalytic domain 0.82 78.0 5.92e-01 100.0% 79.4%
2pq7A00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.82 77.0 7.42e-01 100.0% 89.0%
3gw7A00 1.10.3210.50 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › 0.73 69.0 6.12e-01 99.4% 80.9%
3m1tA00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.73 69.0 5.64e-01 100.0% 68.4%
3ccgA00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.71 64.0 5.98e-01 94.9% 83.1%
2ogiB00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.71 65.0 6.03e-01 97.5% 83.9%
2dqbB00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.70 64.0 4.90e-01 99.4% 75.4%
1u6zA03 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.69 61.0 6.37e-01 97.5% 100.0%
3nqwA00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.69 64.0 6.14e-01 100.0% 95.5%
4dmbB00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.67 58.0 5.49e-01 94.9% 88.9%
1jkwA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.63 43.0 4.15e-01 86.6% 61.4%
2i53A01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.62 44.0 4.61e-01 87.3% 79.7%
1j8yF01 1.20.120.140 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain 0.61 29.0 3.63e-01 82.2% 75.6%
1zp2A02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.60 41.0 4.73e-01 86.6% 97.3%
6z4xA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.60 39.0 4.01e-01 86.6% 66.5%
5xs2B02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.59 44.0 4.76e-01 87.3% 93.9%
3ls1A00 1.20.120.290 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Oxygen-evolving enhancer protein 3 (PsbQ), four-helix up-down bundle 0.58 31.0 3.33e-01 80.3% 59.4%
3cr3A00 1.25.40.340 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › DhaL domain 0.58 41.0 3.87e-01 72.6% 98.4%
2vixA02 1.10.150.630 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.58 32.0 4.01e-01 71.3% 92.1%
1or4B00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.55 39.0 3.92e-01 72.6% 80.4%
4rh7A01 1.20.920.20 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › 0.55 49.0 3.73e-01 100.0% 65.3%
1x9fC00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.54 38.0 3.94e-01 72.0% 90.6%
6vxcA01 3.20.70.20 Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › 0.53 47.0 3.09e-01 100.0% 73.2%
2khmA01 1.10.10.1350 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Spidroin domain, C-terminal domain 0.53 32.0 3.77e-01 93.6% 87.0%
2nr9A00 1.20.1540.10 Mainly Alpha › Up-down Bundle › Rhomboid-like fold › Rhomboid-like 0.53 41.0 3.86e-01 87.3% 66.7%
1euhA01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.52 46.0 3.90e-01 100.0% 69.3%
4ip8A00 1.10.132.110 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Serum amyloid A protein 0.51 33.0 3.91e-01 84.1% 98.1%
3kraC00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.51 44.0 3.80e-01 98.1% 93.4%
3ce9A02 1.20.1090.10 Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain 0.50 42.0 3.98e-01 91.7% 92.3%
ECOD (52)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5004208 131.1.1.3 alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD 0.85 78.0 6.97e-01 95.5% 91.9%
5077860 131.1.1.3 alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD 0.85 76.0 6.97e-01 93.0% 88.7%
4950795 131.1.1.3 alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD 0.85 76.0 7.00e-01 93.0% 87.6%
4985686 131.1.1.3 alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD 0.84 80.0 7.01e-01 99.4% 90.9%
4984123 131.1.1.3 alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD 0.84 74.0 6.99e-01 91.1% 91.7%
4941136 131.1.1.3 alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD 0.84 77.0 7.21e-01 95.5% 91.4%
5044683 131.1.1.3 alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD 0.84 76.0 7.05e-01 94.9% 91.6%
4977938 131.1.1.3 alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD 0.84 69.0 6.90e-01 85.4% 91.3%
5052181 131.1.1.3 alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD 0.83 75.0 6.76e-01 94.3% 87.8%
5073757 131.1.1.3 alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD 0.83 76.0 6.84e-01 95.5% 90.7%
5054373 131.1.1.3 alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD 0.83 75.0 7.03e-01 95.5% 90.5%
5045848 131.1.1.3 alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD 0.82 68.0 6.13e-01 85.4% 80.3%
5077999 131.1.1.3 alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD 0.82 77.0 7.18e-01 98.7% 92.1%
5058334 131.1.1.3 alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD 0.81 76.0 6.72e-01 98.7% 92.1%
4999268 131.1.1.3 alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD 0.81 71.0 6.68e-01 91.7% 91.4%
3256767 131.1.1.0 alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like 0.80 75.0 6.63e-01 98.7% 88.5%
3280004 131.1.1.0 alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like 0.78 66.0 6.09e-01 100.0% 70.8%
3284159 131.1.1.0 alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like 0.75 64.0 6.13e-01 100.0% 79.4%
5062203 131.1.1.3 alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD 0.75 66.0 6.52e-01 92.4% 100.0%
3986327 140.1.1.23 alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › tRNA_synt_2f 0.74 65.0 5.96e-01 92.4% 93.0%
3989681 304.20.1.5 a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain › tRNA_synt_2f 0.74 65.0 5.65e-01 91.7% 84.9%
4370889 131.1.1.24 alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › tRNA_synt_2f 0.74 64.0 5.38e-01 91.7% 75.7%
4324950 131.1.1.24 alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › tRNA_synt_2f 0.73 64.0 5.37e-01 91.7% 87.2%
138716 131.1.1.7 alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HDOD 0.73 69.0 5.64e-01 100.0% 68.4%
4123594 131.1.1.4 alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD,HD_assoc 0.73 67.0 5.11e-01 98.7% 73.3%
4949257 131.1.1.3 alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD 0.72 66.0 4.90e-01 99.4% 71.5%
4665589 131.1.1.4 alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD,HD_assoc 0.72 66.0 4.88e-01 99.4% 76.7%
3604550 131.1.1.5 alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD,HD_assoc_2 0.72 65.0 4.76e-01 96.2% 46.8%
5071256 131.1.1.3 alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD 0.71 60.0 5.90e-01 87.9% 86.7%
4086349 131.1.1.3 alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD 0.71 65.0 5.69e-01 97.5% 95.1%
3961819 131.1.1.3 alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD 0.71 64.0 5.09e-01 96.2% 90.7%
4942450 131.1.1.10 alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD_3 0.71 62.0 5.96e-01 93.0% 94.3%
4049639 131.1.1.24 alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › tRNA_synt_2f 0.70 61.0 5.05e-01 92.4% 69.6%
5037823 131.1.1.10 alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD_3 0.70 61.0 5.87e-01 92.4% 95.4%
4408293 131.1.1.24 alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › tRNA_synt_2f 0.70 60.0 4.92e-01 92.4% 78.2%
4039688 131.1.1.4 alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD,HD_assoc 0.70 64.0 4.80e-01 99.4% 77.1%
3584809 131.1.1.12 alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD_4 0.70 65.0 6.01e-01 99.4% 89.6%
4352626 131.1.1.4 alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD,HD_assoc 0.70 64.0 4.80e-01 99.4% 75.7%
4541584 140.1.1.11 alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › DALR_1 0.69 60.0 4.59e-01 92.4% 63.7%
3322834 131.1.1.24 alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › tRNA_synt_2f 0.69 60.0 5.18e-01 92.4% 90.4%
4246582 131.1.1.4 alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD,HD_assoc 0.69 64.0 4.72e-01 99.4% 77.7%
3804600 304.20.1.5 a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain › tRNA_synt_2f 0.69 60.0 5.10e-01 92.4% 86.8%
4091240 131.1.1.37 alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD, HDOD, HD_assoc 0.69 64.0 4.79e-01 99.4% 77.9%
5076356 131.1.1.3 alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD 0.68 58.0 5.79e-01 89.2% 93.7%
3971047 131.1.1.10 alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD_3 0.68 59.0 5.64e-01 93.0% 93.9%
4985358 131.1.1.10 alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD_3 0.66 58.0 5.67e-01 95.5% 97.6%
3284671 1075.5.1.1 alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter › MatE 0.63 44.0 3.89e-01 71.3% 87.8%
4146848 131.2.1.4 alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like › PolyA_pol_RNAbd,tRNA_NucTran2_2 0.59 48.0 4.11e-01 93.0% 54.4%
3787521 101.1.10.1 alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.57 42.0 4.16e-01 86.6% 71.5%
4952396 1075.5.1.1 alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter › MatE 0.54 40.0 3.52e-01 75.2% 76.1%
3277650 1076.1.1.1 alpha bundles › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Rce1-like 0.51 43.0 3.74e-01 92.4% 87.8%
3352210 150.1.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.50 35.0 3.15e-01 71.3% 62.2%
D2 medium residues 1-46_133-145
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2cqnA00 1.10.10.440 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain 0.62 44.0 4.05e-01 88.1% 57.1%
2n80A00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.55 38.0 3.37e-01 74.6% 50.0%
1gwiA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.52 41.0 2.60e-01 94.9% 65.7%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3652395 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.64 46.0 4.62e-01 88.1% 76.7%
3518708 2004.1.1.17 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Myosin_head 0.56 45.0 2.58e-01 91.5% 16.6%
4302518 109.4.1.1259 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_PBS, HEAT_2 0.56 43.0 3.33e-01 91.5% 78.8%
3938667 101.11.1.1 alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase 0.55 43.0 3.80e-01 88.1% 68.9%
1934768 191.1.1.32 alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_30 0.52 42.0 3.36e-01 96.6% 47.4%
D3 medium residues 47-132
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1dqgA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.55 45.0 3.94e-01 90.7% 79.1%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3621591 6.1.1.4 beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › Ricin_B_lectin 0.56 46.0 3.85e-01 93.0% 78.8%
3216349 6.1.1.4 beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › Ricin_B_lectin 0.51 42.0 3.75e-01 93.0% 84.6%
3937682 6.1.1.4 beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › Ricin_B_lectin 0.51 41.0 3.62e-01 93.0% 80.4%