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Ig7659_scaffold_8_prodigal-single.1__X__X__00125
Bact-VirIg7659_scaffold_8_prodigal-single.1__X__X__00125
Identity
- Kingdom:
- phage
Quality
87.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-62
Domain cluster:
representative
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1jalA03 | 1.10.150.300 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Obg-related GTPase Ych/YyaF, coiled-coil domain | 0.69 | 56.0 | 5.17e-01 | 93.3% | 81.5% |
| 4kc9A02 | 1.20.120.1750 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.66 | 57.0 | 3.83e-01 | 95.0% | 38.9% |
| 2p5tA00 | 1.10.8.130 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.66 | 58.0 | 5.06e-01 | 100.0% | 84.8% |
| 4ivnA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.66 | 49.0 | 4.57e-01 | 81.7% | 77.6% |
| 1lq7A00 | 1.20.1270.70 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Designed single chain three-helix bundle | 0.65 | 54.0 | 5.23e-01 | 95.0% | 97.0% |
| 5c8aA01 | 1.10.1240.10 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain | 0.64 | 43.0 | 3.97e-01 | 70.0% | 53.8% |
| 2b0hA01 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.62 | 51.0 | 4.10e-01 | 95.0% | 65.6% |
| 1a7eA00 | 1.20.120.50 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hemerythrin-like | 0.62 | 53.0 | 4.36e-01 | 100.0% | 62.7% |
| 4dokA01 | 3.50.70.10 | Alpha Beta › 3-Layer(bba) Sandwich › Chalcone isomerase › | 0.61 | 52.0 | 3.96e-01 | 100.0% | 58.1% |
| 1eyqA02 | 3.50.70.10 | Alpha Beta › 3-Layer(bba) Sandwich › Chalcone isomerase › | 0.61 | 52.0 | 3.91e-01 | 100.0% | 57.9% |
| 3bbzA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.61 | 43.0 | 4.58e-01 | 96.7% | 95.8% |
| 2pkeA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.60 | 43.0 | 3.95e-01 | 75.0% | 97.4% |
| 3u8vA00 | 1.20.120.660 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › IL-4 antagonist (De novo design) like domain | 0.60 | 49.0 | 4.48e-01 | 93.3% | 69.9% |
| 3kavA00 | 1.20.1270.360 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.60 | 49.0 | 4.30e-01 | 100.0% | 84.3% |
| 2o38A01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.59 | 51.0 | 5.06e-01 | 100.0% | 96.9% |
| 4m70I00 | 1.20.5.4130 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.58 | 53.0 | 4.30e-01 | 100.0% | 58.3% |
| 3t46A00 | 1.20.1270.10 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.58 | 49.0 | 4.63e-01 | 100.0% | 89.3% |
| 4nqwA01 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.58 | 40.0 | 3.61e-01 | 73.3% | 56.0% |
| 2gf4A00 | 1.20.1270.110 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Uncharacterised protein family UPF0058 | 0.57 | 48.0 | 4.31e-01 | 98.3% | 71.6% |
| 4m0mA03 | 1.20.1270.430 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.57 | 46.0 | 4.31e-01 | 96.7% | 98.7% |
| 3phuA01 | 3.90.70.80 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › | 0.57 | 46.0 | 3.53e-01 | 100.0% | 36.5% |
| 4n06A02 | 1.20.120.920 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain | 0.56 | 45.0 | 3.10e-01 | 100.0% | 63.3% |
| 7nc3F01 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.55 | 38.0 | 3.10e-01 | 75.0% | 37.7% |
| 2g8lA02 | 1.10.285.20 | Mainly Alpha › Orthogonal Bundle › Glutamate Dehydrogenase; Chain A, domain 3 › Uncharacterised protein PF01937, DUF89, domain 2 | 0.53 | 41.0 | 4.07e-01 | 95.0% | 80.0% |
| 1bcrA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.51 | 41.0 | 2.86e-01 | 98.3% | 35.0% |
| 4h8aB01 | 1.10.1530.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel | 0.51 | 39.0 | 3.99e-01 | 96.7% | 91.7% |
ECOD (28)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3633621 | 192.5.1.16 ↗ | alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › PF26729 | 0.72 | 49.0 | 4.39e-01 | 70.0% | 53.8% |
| 4572867 | 601.2.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › Cytochromes › Cytochromes › 7tm_1 | 0.69 | 46.0 | 3.42e-01 | 70.0% | 80.6% |
| 5067835 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.66 | 57.0 | 5.47e-01 | 95.0% | 94.3% |
| 5061323 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.66 | 56.0 | 5.51e-01 | 96.7% | 96.9% |
| 3581944 | 632.15.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Staphylococcal complement inhibitor (SCIN) › Staphylococcal complement inhibitor (SCIN) | 0.65 | 56.0 | 4.62e-01 | 100.0% | 57.4% |
| 3896767 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.64 | 56.0 | 5.21e-01 | 98.3% | 81.3% |
| 3465074 | 611.9.1.4 ↗ | alpha bundles › N-cbl like › Resistance protein (Rx) N-terminal domain › Resistance protein (Rx) N-terminal domain › Rx_N | 0.64 | 55.0 | 4.36e-01 | 96.7% | 67.2% |
| 4034431 | 632.15.1.1 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Staphylococcal complement inhibitor (SCIN) › Staphylococcal complement inhibitor (SCIN) › CompInhib_SCIN | 0.64 | 55.0 | 5.03e-01 | 100.0% | 79.8% |
| 3914715 | 605.1.1.235 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › BicD | 0.63 | 56.0 | 5.25e-01 | 100.0% | 80.0% |
| 3878853 | 4044.1.1.13 ↗ | alpha bundles › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › BicD | 0.63 | 56.0 | 4.99e-01 | 100.0% | 70.6% |
| 4542751 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.63 | 50.0 | 3.78e-01 | 91.7% | 61.3% |
| 4997710 | 3684.1.1.0 ↗ | alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like | 0.62 | 51.0 | 4.18e-01 | 95.0% | 55.8% |
| 3603512 | 633.5.1.1 ↗ | alpha bundles › Bromodomain-like › LemA-like › LemA-like › LemA | 0.61 | 51.0 | 4.00e-01 | 100.0% | 46.9% |
| 3643800 | 813.1.1.1 ↗ | a+b two layers › Chalcone isomerase › Chalcone isomerase › Chalcone isomerase › Chalcone | 0.61 | 52.0 | 3.62e-01 | 100.0% | 43.8% |
| 5069090 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.61 | 51.0 | 5.10e-01 | 95.0% | 100.0% |
| 5062044 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.61 | 50.0 | 4.71e-01 | 100.0% | 77.5% |
| 3598401 | 160.1.1.0 ↗ | alpha superhelices › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase | 0.58 | 48.0 | 3.68e-01 | 96.7% | 49.0% |
| 5061320 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.58 | 48.0 | 4.49e-01 | 100.0% | 78.8% |
| 3428408 | 632.2.1.30 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains › Auxin_canalis | 0.58 | 47.0 | 4.46e-01 | 100.0% | 74.7% |
| 5059280 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.58 | 47.0 | 4.71e-01 | 96.7% | 100.0% |
| 4981746 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.57 | 47.0 | 4.56e-01 | 100.0% | 94.3% |
| 5058630 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.57 | 47.0 | 4.63e-01 | 100.0% | 96.9% |
| 5061758 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.56 | 46.0 | 4.37e-01 | 98.3% | 82.7% |
| 5061325 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.56 | 49.0 | 4.84e-01 | 100.0% | 96.9% |
| 4982048 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.56 | 46.0 | 4.32e-01 | 100.0% | 78.8% |
| 5059485 | 7076.1.1.0 ↗ | 0.55 | 43.0 | 4.40e-01 | 91.7% | 100.0% | |
| 5013682 | 632.18.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › hypothetical protein PA2901 › hypothetical protein PA2901 | 0.54 | 43.0 | 4.00e-01 | 100.0% | 70.0% |
| 4174469 | 4333.1.1.1 ↗ | a+b complex topology › DNA methylase specificity domain › DNA methylase specificity domain › DNA methylase specificity domain › Methylase_S | 0.52 | 42.0 | 3.00e-01 | 96.7% | 80.0% |
D2
high
residues 70-137
Domain cluster:
representative
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2a4vA01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.74 | 53.0 | 4.06e-01 | 75.0% | 81.1% |
| 4wi1A02 | 3.40.50.800 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain | 0.71 | 51.0 | 4.19e-01 | 76.5% | 88.6% |
| 3zxxA00 | 3.40.50.200 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidase S8/S53 domain | 0.67 | 60.0 | 4.01e-01 | 100.0% | 72.1% |
| 4aktB00 | 3.40.50.200 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidase S8/S53 domain | 0.66 | 58.0 | 3.78e-01 | 100.0% | 89.2% |
| 1f32A02 | 3.30.1120.50 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › Pepsin inhibitor-3 | 0.65 | 44.0 | 4.62e-01 | 88.2% | 78.3% |
| 4k22B01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.65 | 57.0 | 3.89e-01 | 98.5% | 85.7% |
| 4jd9G00 | 1.10.238.20 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain | 0.64 | 48.0 | 4.01e-01 | 80.9% | 59.2% |
| 7dsmA01 | 3.40.1030.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pyrimidine Nucleoside Phosphorylase; Chain A, domain 2 › Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain | 0.62 | 55.0 | 3.72e-01 | 100.0% | 86.9% |
| 3hz4A00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.61 | 43.0 | 3.69e-01 | 76.5% | 82.5% |
| 6fdmA02 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.61 | 41.0 | 3.55e-01 | 70.6% | 61.8% |
| 7k5cB01 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.59 | 53.0 | 4.02e-01 | 100.0% | 59.1% |
| 2p0tA02 | 1.10.60.30 | Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › PSPTO4464-like domains | 0.59 | 39.0 | 3.85e-01 | 89.7% | 63.9% |
| 1i5nB00 | 1.20.120.160 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain | 0.58 | 48.0 | 4.03e-01 | 94.1% | 79.0% |
| 3crvA02 | 1.10.275.30 | Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › | 0.58 | 40.0 | 3.35e-01 | 70.6% | 75.9% |
| 2vwaA00 | 1.20.58.1330 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Plasmodium falciparum UIS3 membrane protein | 0.58 | 42.0 | 3.68e-01 | 76.5% | 87.9% |
| 2r7dA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.58 | 35.0 | 3.48e-01 | 95.6% | 59.4% |
| 2d4aA02 | 3.90.110.10 | Alpha Beta › Alpha-Beta Complex › L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2 › Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal | 0.56 | 38.0 | 2.90e-01 | 70.6% | 46.3% |
| 3ikhA00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.55 | 46.0 | 3.18e-01 | 100.0% | 97.6% |
| 3bf5A01 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.55 | 48.0 | 3.33e-01 | 100.0% | 94.5% |
| 3d5lB01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 44.0 | 3.84e-01 | 86.8% | 88.2% |
| 3pl2A01 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.54 | 45.0 | 3.13e-01 | 98.5% | 63.8% |
| 3ieeA02 | 1.20.58.820 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Uncharacterised protein PF12889, C-terminal DUF3829 | 0.54 | 43.0 | 3.77e-01 | 86.8% | 92.2% |
| 1ncsA00 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.53 | 33.0 | 3.77e-01 | 88.2% | 93.6% |
| 3rosA01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.51 | 44.0 | 2.94e-01 | 95.6% | 72.4% |
ECOD (21)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3662905 | 101.1.1.29 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3 | 0.81 | 47.0 | 5.20e-01 | 92.6% | 72.7% |
| 3430842 | 103.1.1.39 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › DUF1421 | 0.74 | 50.0 | 5.48e-01 | 77.9% | 85.5% |
| 4970031 | 2007.1.2.4 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor | 0.74 | 65.0 | 4.61e-01 | 95.6% | 95.9% |
| 4569264 | 857.1.1.1 ↗ | a+b duplicates or obligate multimers › Cell division protein ZapA-like › Cell division protein ZapA-like › Cell division protein ZapA-like › ZapA | 0.66 | 54.0 | 4.82e-01 | 89.7% | 64.2% |
| 4170287 | 1.1.9.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg | 0.65 | 47.0 | 3.32e-01 | 76.5% | 38.1% |
| 4971503 | 223.2.1.5 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 | 0.65 | 44.0 | 3.56e-01 | 70.6% | 37.5% |
| 4286831 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.65 | 49.0 | 5.26e-01 | 92.6% | 100.0% |
| 5063693 | 210.1.6.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › Gamma-glutamyltranspeptidase-like › G_glu_transpept | 0.61 | 48.0 | 2.81e-01 | 85.3% | 16.3% |
| 3963134 | 605.4.1.4 ↗ | alpha duplicates or obligate multimers › ROP-like › ROP protein › ROP protein › DUF202 | 0.59 | 42.0 | 3.64e-01 | 75.0% | 73.3% |
| 4234713 | 2004.1.1.159 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M | 0.59 | 49.0 | 3.56e-01 | 97.1% | 42.9% |
| 4492296 | 327.19.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › DNA mismatch repair protein MutL regulatory subdomain › DNA mismatch repair protein MutL regulatory subdomain › MutL_C | 0.58 | 46.0 | 4.16e-01 | 89.7% | 80.0% |
| 3187634 | 7579.1.1.6 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1 | 0.56 | 45.0 | 2.69e-01 | 89.7% | 15.9% |
| 3595283 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.56 | 43.0 | 3.63e-01 | 82.4% | 73.0% |
| 4081386 | 140.1.1.0 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases | 0.56 | 45.0 | 3.23e-01 | 86.8% | 42.5% |
| 3449559 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.56 | 39.0 | 2.85e-01 | 73.5% | 43.2% |
| 3892014 | 304.43.1.0 ↗ | a+b two layers › Alpha-beta plaits › Hypothetical protein TT1725 › Hypothetical protein TT1725 | 0.54 | 41.0 | 4.01e-01 | 98.5% | 73.3% |
| 3897820 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.54 | 40.0 | 3.91e-01 | 98.5% | 72.0% |
| 3953994 | 241.11.1.1 ↗ | a+b two layers › Type III secretory system chaperone-like › YjbR-like › YjbR-like › YjbR | 0.54 | 37.0 | 3.13e-01 | 72.1% | 89.2% |
| 3217927 | 7579.1.1.81 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Arb2 | 0.53 | 44.0 | 2.98e-01 | 97.1% | 69.5% |
| 4600052 | 2003.1.3.3 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › Pyr_redox_2 | 0.52 | 46.0 | 3.22e-01 | 98.5% | 84.5% |
| 3979499 | 101.1.2.8 ↗ | alpha arrays › HTH › HTH › winged helix domain › Trans_reg_C | 0.52 | 36.0 | 3.23e-01 | 72.1% | 81.1% |
D3
high
residues 145-260
Domain cluster:
representative
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2yxyA01 | 1.10.287.880 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Hypothetical protein YfhH domain | 0.66 | 30.0 | 4.34e-01 | 87.1% | 98.0% |
| 1vwxS02 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.64 | 35.0 | 4.18e-01 | 85.3% | 80.3% |
| 1vmgA00 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.63 | 32.0 | 3.76e-01 | 76.7% | 68.3% |
| 1yleA02 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.61 | 30.0 | 3.81e-01 | 90.5% | 81.5% |
| 2jxtA01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.57 | 32.0 | 3.75e-01 | 85.3% | 80.3% |
| 2p06B00 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.56 | 34.0 | 3.86e-01 | 80.2% | 79.5% |
| 6c80A03 | 3.40.462.10 | Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › FAD-linked oxidases, C-terminal domain | 0.56 | 42.0 | 3.36e-01 | 79.3% | 71.9% |
| 6gpxB00 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.55 | 39.0 | 3.05e-01 | 75.0% | 89.0% |
| 2ebmA00 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.53 | 37.0 | 3.60e-01 | 70.7% | 78.1% |
| 1cw1A00 | 3.40.718.10 | Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase | 0.53 | 43.0 | 3.00e-01 | 88.8% | 52.0% |
| 3v5uA02 | 1.20.1420.30 | Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › NCX, central ion-binding region | 0.53 | 42.0 | 3.46e-01 | 87.1% | 81.4% |
| 4e4eA01 | 1.10.287.990 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain | 0.52 | 30.0 | 3.62e-01 | 81.9% | 91.5% |
| 1gqiA03 | 3.90.1330.10 | Alpha Beta › Alpha-Beta Complex › Alpha-d-glucuronidase, C-terminal Domain › Alpha-glucuronidase, C-terminal domain | 0.52 | 42.0 | 3.37e-01 | 87.9% | 72.2% |
| 1l8nA03 | 3.90.1330.10 | Alpha Beta › Alpha-Beta Complex › Alpha-d-glucuronidase, C-terminal Domain › Alpha-glucuronidase, C-terminal domain | 0.51 | 42.0 | 3.53e-01 | 89.7% | 84.9% |
| 5czcB01 | 3.40.366.10 | Alpha Beta › 3-Layer(aba) Sandwich › Malonyl-Coenzyme A Acyl Carrier Protein; domain 2 › Malonyl-Coenzyme A Acyl Carrier Protein, domain 2 | 0.51 | 38.0 | 3.06e-01 | 77.6% | 95.6% |
| 1j5yA02 | 3.30.1340.20 | Alpha Beta › 2-Layer Sandwich › Histidine-containing Protein; Chain: A; › 3H domain | 0.51 | 30.0 | 3.10e-01 | 96.6% | 58.9% |
| 1tjoB00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.50 | 40.0 | 3.54e-01 | 86.2% | 79.4% |
| 2nmlA00 | 3.30.2260.10 | Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary | 0.50 | 33.0 | 3.50e-01 | 96.6% | 76.0% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5080205 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.66 | 29.0 | 4.09e-01 | 91.4% | 92.0% |
| 5067865 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.66 | 35.0 | 4.33e-01 | 89.7% | 84.3% |
| 4517135 | 304.41.1.1 ↗ | a+b two layers › Alpha-beta plaits › Glutamyl tRNA-reductase catalytic, N-terminal domain › Glutamyl tRNA-reductase catalytic, N-terminal domain › GlutR_N | 0.64 | 54.0 | 4.69e-01 | 90.5% | 90.3% |
| 4013514 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.63 | 35.0 | 3.65e-01 | 85.3% | 59.0% |
| 3926687 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.61 | 37.0 | 3.72e-01 | 99.1% | 57.5% |
| 3845790 | 192.15.1.0 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains | 0.58 | 33.0 | 3.51e-01 | 77.6% | 63.0% |
| 3746892 | 601.1.2.1 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › Vinculin | 0.56 | 33.0 | 3.13e-01 | 72.4% | 48.1% |
| 5068178 | 302.4.1.0 ↗ | a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit | 0.54 | 31.0 | 3.37e-01 | 89.7% | 66.3% |
| 165197 | 216.1.1.4 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › RWD | 0.53 | 37.0 | 3.60e-01 | 70.7% | 78.1% |
| 4947633 | 7510.1.1.1 ↗ | a/b three-layered sandwiches › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like › Iso_dh | 0.53 | 40.0 | 3.52e-01 | 80.2% | 100.0% |
| 5034119 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.50 | 39.0 | 3.33e-01 | 83.6% | 71.0% |