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Ig7659_scaffold_8_prodigal-single.1__X__X__00155

Bact-Vir

Ig7659_scaffold_8_prodigal-single.1__X__X__00155

Identity

Kingdom:
phage

Quality

61.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 111-162
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ossC00 2.30.30.830 Mainly Beta › Roll › SH3 type barrels. › 0.78 67.0 6.31e-01 100.0% 89.2%
1y14D02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.71 60.0 5.07e-01 100.0% 57.5%
1hxdA03 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.70 38.0 4.16e-01 88.5% 62.8%
4xtvB02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.69 40.0 4.19e-01 94.2% 62.5%
2eayB02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.66 40.0 4.18e-01 98.1% 65.3%
2cqoA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 50.0 4.14e-01 94.2% 78.3%
1bdoA00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.58 39.0 3.48e-01 71.2% 83.7%
2iz4A01 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.56 40.0 4.11e-01 88.5% 85.7%
1z6hA00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.56 45.0 4.06e-01 88.5% 81.9%
2z1cB00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 45.0 3.99e-01 94.2% 62.2%
5teqA01 3.30.470.110 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › 0.56 47.0 3.14e-01 100.0% 39.6%
5bn3A03 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.55 45.0 4.23e-01 90.4% 93.8%
4a2lF02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 44.0 2.83e-01 100.0% 27.3%
3mp6A05 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 47.0 4.41e-01 98.1% 81.0%
2dcnA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.53 42.0 2.66e-01 92.3% 25.6%
5fl3A01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.52 37.0 3.08e-01 100.0% 40.0%
2exdA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.50 43.0 3.79e-01 94.2% 66.2%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3967510 3454.1.1.0 ↗ beta barrels › GspC HR domain/PilP-like › GspC HR domain/PilP-like › GspC HR domain/PilP-like 0.84 76.0 6.86e-01 100.0% 91.4%
4009761 3454.1.1.2 ↗ beta barrels › GspC HR domain/PilP-like › GspC HR domain/PilP-like › GspC HR domain/PilP-like › T2SSC 0.80 70.0 6.52e-01 100.0% 95.4%
4343574 3454.1.1.5 ↗ beta barrels › GspC HR domain/PilP-like › GspC HR domain/PilP-like › GspC HR domain/PilP-like › Y4YQ_C 0.79 69.0 7.01e-01 94.2% 100.0%
3974480 3454.1.1.0 ↗ beta barrels › GspC HR domain/PilP-like › GspC HR domain/PilP-like › GspC HR domain/PilP-like 0.75 66.0 6.17e-01 100.0% 92.3%
3989485 4.1.1.28 ↗ beta barrels › SH3 › SH3 › SH3 › BPL_C 0.70 45.0 4.61e-01 98.1% 68.0%
4951012 4.1.1.28 ↗ beta barrels › SH3 › SH3 › SH3 › BPL_C 0.70 42.0 4.29e-01 94.2% 62.0%
2756306 2.1.1.7 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 0.70 59.0 4.78e-01 100.0% 48.5%
3970791 3454.1.1.0 ↗ beta barrels › GspC HR domain/PilP-like › GspC HR domain/PilP-like › GspC HR domain/PilP-like 0.69 58.0 5.75e-01 100.0% 96.4%
5003618 4.1.1.28 ↗ beta barrels › SH3 › SH3 › SH3 › BPL_C 0.69 40.0 4.31e-01 92.3% 66.7%
5000639 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.69 58.0 4.43e-01 100.0% 39.8%
5049139 4.7.1.1 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 0.67 51.0 4.16e-01 82.7% 59.0%
3396897 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.64 44.0 4.18e-01 98.1% 60.3%
3564972 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 44.0 3.94e-01 92.3% 52.9%
3304602 4.1.1.427 ↗ beta barrels › SH3 › SH3 › SH3 › F-box 0.56 46.0 3.83e-01 100.0% 51.6%
3313139 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.55 46.0 3.21e-01 94.2% 70.9%
4245466 4.1.1.28 ↗ beta barrels › SH3 › SH3 › SH3 › BPL_C 0.54 41.0 4.21e-01 86.5% 86.0%
3793758 394.1.1.1 ↗ few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_14 0.52 40.0 4.17e-01 98.1% 91.8%
3952939 220.1.1.82 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_6 0.51 41.0 3.77e-01 100.0% 65.3%
4957372 325.1.7.1 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › Biotin_lipoyl 0.51 39.0 3.27e-01 82.7% 65.6%
4432123 2.14.1.1 ↗ beta barrels › OB-fold › HupF/HypC-like › HupF/HypC-like › HupF_HypC 0.51 41.0 3.48e-01 94.2% 53.3%
3511271 214.1.1.10 ↗ a+b two layers › SH2 › SH2 › SH2 › DUF7145 0.50 43.0 3.41e-01 100.0% 68.7%