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Ig7659_scaffold_8_prodigal-single.1__X__X__00162
Bact-VirIg7659_scaffold_8_prodigal-single.1__X__X__00162
Identity
- Kingdom:
- phage
Quality
77.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 9-83
Domain cluster:
representative
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2oxlA00 | 1.20.5.5260 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.66 | 45.0 | 4.82e-01 | 70.7% | 95.2% |
| 2m3aA00 | 1.10.10.1900 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Knl-2 Myb-like DNA-binding domain-like | 0.65 | 37.0 | 3.92e-01 | 78.7% | 62.7% |
| 2f76X00 | 1.10.150.490 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Retroviral GAG p10 protein | 0.60 | 47.0 | 4.36e-01 | 88.0% | 81.0% |
| 1yo7A00 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.60 | 44.0 | 3.84e-01 | 80.0% | 79.2% |
| 7zxkC01 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.59 | 43.0 | 3.53e-01 | 78.7% | 64.0% |
| 8d7hD01 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.59 | 43.0 | 3.37e-01 | 78.7% | 57.2% |
| 3rhaA00 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.58 | 40.0 | 2.47e-01 | 86.7% | 11.8% |
| 2kvsA00 | 1.10.150.260 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › YozE SAM-like | 0.56 | 46.0 | 4.51e-01 | 93.3% | 85.0% |
| 7qocA01 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.54 | 40.0 | 3.11e-01 | 81.3% | 55.1% |
| 3deeA01 | 1.10.150.690 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DUF2063 | 0.54 | 43.0 | 4.18e-01 | 93.3% | 86.0% |
| 1ao0A01 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.53 | 39.0 | 2.74e-01 | 81.3% | 59.7% |
| 2iw3A02 | 1.20.1390.20 | Mainly Alpha › Up-down Bundle › PWI domain › | 0.53 | 43.0 | 4.13e-01 | 93.3% | 76.7% |
| 2rbdA01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.53 | 45.0 | 3.65e-01 | 97.3% | 84.7% |
| 3f5cB00 | 1.10.565.10 | Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor | 0.52 | 43.0 | 3.31e-01 | 93.3% | 59.0% |
| 1f9cA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.52 | 45.0 | 3.90e-01 | 100.0% | 84.4% |
| 2klqA00 | 1.20.58.870 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.52 | 38.0 | 3.34e-01 | 78.7% | 87.7% |
| 1r0mA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.52 | 45.0 | 3.80e-01 | 100.0% | 76.9% |
| 1ahjB01 | 1.10.472.20 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Nitrile hydratase, beta subunit | 0.51 | 36.0 | 3.23e-01 | 86.7% | 50.9% |
| 5fb0A02 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.50 | 37.0 | 3.33e-01 | 80.0% | 85.7% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5001587 | 2004.1.1.76 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF87 | 0.66 | 50.0 | 3.20e-01 | 100.0% | 15.7% |
| 3226857 | 101.1.1.4 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › PAX | 0.64 | 36.0 | 3.49e-01 | 73.3% | 49.4% |
| 3381231 | 101.1.1.3 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding | 0.62 | 36.0 | 3.78e-01 | 77.3% | 61.4% |
| 3667030 | 101.1.2.466 ↗ | alpha arrays › HTH › HTH › winged helix domain › WHD_MCM3_C | 0.61 | 39.0 | 3.92e-01 | 77.3% | 62.8% |
| 3523264 | 633.23.1.22 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › MARVEL | 0.61 | 45.0 | 3.75e-01 | 78.7% | 80.0% |
| 3864123 | 633.21.1.10 ↗ | alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 › MARVEL | 0.60 | 44.0 | 3.74e-01 | 78.7% | 80.0% |
| 3770817 | 601.1.2.47 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › MARVEL | 0.60 | 44.0 | 3.73e-01 | 78.7% | 80.0% |
| 4955902 | 2004.1.1.76 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF87 | 0.58 | 51.0 | 3.31e-01 | 100.0% | 22.5% |
| 5071262 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.58 | 50.0 | 3.22e-01 | 100.0% | 22.6% |
| 3393075 | 601.7.1.44 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › MYCBPAP | 0.58 | 44.0 | 4.46e-01 | 85.3% | 97.3% |
| 5053839 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.58 | 39.0 | 3.92e-01 | 70.7% | 69.3% |
| 3255275 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.57 | 36.0 | 3.94e-01 | 78.7% | 78.3% |
| 3311291 | 101.1.2.377 ↗ | alpha arrays › HTH › HTH › winged helix domain › MCM5_C | 0.55 | 39.0 | 3.85e-01 | 80.0% | 70.0% |
| 3656604 | 148.1.3.41 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › MCM5_C | 0.55 | 40.0 | 4.01e-01 | 80.0% | 76.0% |
| 4929738 | 6049.1.1.0 ↗ | alpha bundles › PH0832-like › PH0832-like › PH0832-like | 0.55 | 41.0 | 4.19e-01 | 98.7% | 84.0% |
| 3711934 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.55 | 39.0 | 3.72e-01 | 76.0% | 76.7% |
| 3704111 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 38.0 | 3.92e-01 | 77.3% | 78.6% |
| 3546454 | 101.1.2.24 ↗ | alpha arrays › HTH › HTH › winged helix domain › MAGE | 0.54 | 33.0 | 3.08e-01 | 77.3% | 47.4% |
| 4479187 | 101.35.1.5 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH1 | 0.53 | 35.0 | 3.69e-01 | 74.7% | 78.5% |
| 5025361 | 101.1.2.181 ↗ | alpha arrays › HTH › HTH › winged helix domain › MCM_C | 0.53 | 37.0 | 3.69e-01 | 76.0% | 71.8% |
| 4992678 | 632.2.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains | 0.53 | 36.0 | 4.06e-01 | 93.3% | 100.0% |
| 5053865 | 821.1.1.0 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.52 | 35.0 | 3.36e-01 | 70.7% | 95.6% |
| 5844 | 218.1.1.1 ↗ | a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N | 0.52 | 45.0 | 3.92e-01 | 100.0% | 85.5% |
| 3607227 | 4012.3.1.0 ↗ | a+b two layers › SSHS domain › SSHS domain in CRISPR-associated endonuclease Cas9 › SSHS domain in CRISPR-associated endonuclease Cas9 | 0.51 | 32.0 | 3.68e-01 | 84.0% | 98.0% |
| 4942687 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 34.0 | 3.34e-01 | 70.7% | 65.0% |