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Ig7659_scaffold_8_prodigal-single.1__X__X__00204
Bact-VirIg7659_scaffold_8_prodigal-single.1__X__X__00204
Identity
- Kingdom:
- phage
Quality
83.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 22-115
Domain cluster:
representative
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3x1oA00 | 1.20.120.1790 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.63 | 45.0 | 3.91e-01 | 75.5% | 96.6% |
| 2kvcA01 | 1.10.150.430 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DUF3349, helical bundle | 0.61 | 42.0 | 4.37e-01 | 73.4% | 76.1% |
| 3fp3A01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.56 | 43.0 | 3.88e-01 | 94.7% | 58.5% |
| 7qihA01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.54 | 39.0 | 3.85e-01 | 85.1% | 71.3% |
| 4rl5A00 | 1.20.1280.170 | Mainly Alpha › Up-down Bundle › Monooxygenase › Exocyst complex component Exo70 | 0.54 | 45.0 | 2.94e-01 | 92.6% | 43.1% |
| 5jj6B01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.54 | 40.0 | 4.04e-01 | 91.5% | 80.2% |
| 1vkeB00 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.53 | 43.0 | 4.30e-01 | 92.6% | 89.1% |
| 3ma5A00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.53 | 38.0 | 3.90e-01 | 93.6% | 81.1% |
| 2e2eA01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.52 | 43.0 | 3.73e-01 | 98.9% | 57.6% |
| 3hiuD00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.52 | 37.0 | 3.20e-01 | 75.5% | 90.1% |
| 3m0fB02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.52 | 43.0 | 4.00e-01 | 94.7% | 97.6% |
| 2vq2A00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.52 | 45.0 | 3.48e-01 | 98.9% | 62.7% |
| 2c2lA01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.51 | 42.0 | 3.81e-01 | 98.9% | 64.7% |
| 2jqqA00 | 1.20.58.1240 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.51 | 40.0 | 3.48e-01 | 87.2% | 89.6% |
| 2vsyA01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.51 | 43.0 | 3.84e-01 | 96.8% | 90.8% |
| 5fzsA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.51 | 40.0 | 3.91e-01 | 86.2% | 85.0% |
| 1ihgA02 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.51 | 40.0 | 3.54e-01 | 97.9% | 56.6% |
| 1kt1A03 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.51 | 41.0 | 3.52e-01 | 93.6% | 53.2% |
| 1c9bA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.51 | 42.0 | 4.18e-01 | 91.5% | 94.8% |
| 2vmaA00 | 1.20.81.30 | Mainly Alpha › Up-down Bundle › Receptor-associated Protein › Type II secretion system (T2SS), domain F | 0.51 | 34.0 | 3.18e-01 | 95.7% | 54.1% |
| 6z4xA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.50 | 42.0 | 3.64e-01 | 95.7% | 62.6% |
ECOD (22)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3385836 | 601.1.1.138 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › DUF4118 | 0.70 | 48.0 | 4.63e-01 | 72.3% | 90.9% |
| 4507511 | 2006.1.3.6 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim_2 | 0.67 | 48.0 | 3.87e-01 | 76.6% | 60.5% |
| 3374437 | 109.4.1.359 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Exo70_C | 0.63 | 56.0 | 3.58e-01 | 98.9% | 49.2% |
| 3623710 | 3277.2.1.1 ↗ | alpha arrays › Thymine dioxygenase JBP1 DNA-binding domain-like › a C-terminal domain in chromodomain helicase DNA-binding protein 1 › a C-terminal domain in chromodomain helicase DNA-binding protein 1 › CHD1-like_C | 0.60 | 41.0 | 4.02e-01 | 71.3% | 81.0% |
| 4425776 | 141.1.1.8 ↗ | alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › Terpene_syn_C_2 | 0.60 | 47.0 | 3.28e-01 | 85.1% | 43.5% |
| 3286201 | 141.1.1.8 ↗ | alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › Terpene_syn_C_2 | 0.60 | 47.0 | 3.28e-01 | 85.1% | 45.7% |
| 4993093 | 316.1.1.18 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › AbiEii | 0.57 | 48.0 | 3.40e-01 | 96.8% | 55.2% |
| 3323926 | 142.1.1.0 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors | 0.56 | 37.0 | 3.63e-01 | 88.3% | 62.0% |
| 3717178 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.56 | 48.0 | 3.12e-01 | 95.7% | 32.4% |
| 3194347 | 101.1.10.3 ↗ | alpha arrays › HTH › HTH › Cyclin-like › TFIIB | 0.56 | 49.0 | 4.21e-01 | 98.9% | 65.2% |
| 3679788 | 101.1.20.5 ↗ | alpha arrays › HTH › HTH › Sigma54 core-binding domain › TFIIB | 0.56 | 48.0 | 3.94e-01 | 96.8% | 63.9% |
| 3259758 | 109.4.1.454 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Drf_GBD | 0.55 | 46.0 | 3.31e-01 | 96.8% | 35.8% |
| 3510864 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.55 | 47.0 | 3.87e-01 | 97.9% | 61.1% |
| 3923604 | 101.1.10.14 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C_2 | 0.53 | 47.0 | 3.36e-01 | 98.9% | 39.3% |
| 4030134 | 101.1.10.3 ↗ | alpha arrays › HTH › HTH › Cyclin-like › TFIIB | 0.53 | 44.0 | 3.95e-01 | 93.6% | 70.4% |
| 3519581 | 604.12.1.4 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › ATG1-like_MIT1 | 0.52 | 35.0 | 3.15e-01 | 70.2% | 83.7% |
| 5001160 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.52 | 45.0 | 4.11e-01 | 97.9% | 79.2% |
| 3668562 | 101.1.10.3 ↗ | alpha arrays › HTH › HTH › Cyclin-like › TFIIB | 0.52 | 44.0 | 3.72e-01 | 95.7% | 71.5% |
| 3678181 | 109.4.1.359 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Exo70_C | 0.52 | 42.0 | 3.07e-01 | 92.6% | 49.0% |
| 3655226 | 101.1.10.3 ↗ | alpha arrays › HTH › HTH › Cyclin-like › TFIIB | 0.51 | 43.0 | 3.88e-01 | 93.6% | 72.6% |
| 3489209 | 101.1.10.33 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Rrn7_cyclin_C | 0.51 | 42.0 | 4.13e-01 | 91.5% | 100.0% |
| 3830022 | 101.1.10.3 ↗ | alpha arrays › HTH › HTH › Cyclin-like › TFIIB | 0.51 | 41.0 | 3.95e-01 | 89.4% | 89.1% |
D2
medium
residues 116-193
Domain cluster:
representative