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Ig8144_scaffold_2_curated_closed_complete_start-adj_prodigal-single.1__X__X__00018

Bact-Vir

Ig8144_scaffold_2_curated_closed_complete_start-adj_prodigal-single.1__X__X__00018

Identity

Kingdom:
phage

Quality

81.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 46-87_100-162
PDB
Domain cluster: representative
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1krhA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.70 50.0 5.17e-01 89.5% 79.4%
3lnnA02 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.67 46.0 4.88e-01 92.4% 79.6%
1vloA04 2.40.30.110 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains 0.66 45.0 4.78e-01 100.0% 80.2%
3kyfA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.66 50.0 4.90e-01 94.3% 73.7%
7ylrA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.64 50.0 5.06e-01 89.5% 83.8%
4ic5A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.64 45.0 4.59e-01 93.3% 74.0%
4kbxA01 2.40.37.30 Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › 0.63 42.0 3.23e-01 95.2% 31.0%
2wyrB02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.63 43.0 4.68e-01 88.6% 85.9%
2xnjA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.62 47.0 4.80e-01 90.5% 81.7%
3fo8D02 2.40.10.380 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.62 49.0 5.19e-01 100.0% 97.8%
4x8iA02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.62 42.0 4.61e-01 88.6% 85.9%
3dtdD00 2.60.40.1880 Mainly Beta › Sandwich › Immunoglobulin-like › Invasion associated locus B (IalB) protein 0.61 46.0 4.16e-01 100.0% 57.2%
2re7A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.60 46.0 4.32e-01 95.2% 65.9%
2eqkA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 33.0 3.81e-01 81.0% 76.7%
1wruA01 2.30.300.10 Mainly Beta › Roll › Phage tail proteins - horseshoe like beta roll fold › Baseplate protein-like domain - beta roll fold 0.58 37.0 3.20e-01 84.8% 38.3%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 30.0 3.60e-01 80.0% 72.6%
2imlA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 47.0 4.64e-01 93.3% 82.3%
2hrvA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.57 39.0 4.10e-01 91.4% 78.9%
4fvdA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.57 39.0 4.11e-01 91.4% 79.8%
2ed8A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 39.0 4.28e-01 98.1% 87.2%
2d7eA01 3.40.1440.60 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › PriA, 3(prime) DNA-binding domain 0.56 30.0 3.27e-01 90.5% 60.0%
4ecnA01 2.60.40.3540 Mainly Beta › Sandwich › Immunoglobulin-like › Domain of unknown function DUF4458 0.56 47.0 4.78e-01 100.0% 92.2%
2ypjA00 2.60.120.1070 Mainly Beta › Sandwich › Jelly Rolls › 0.56 40.0 3.82e-01 100.0% 63.1%
3q39B02 2.40.30.120 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses 0.56 44.0 4.33e-01 90.5% 80.0%
6j0qA02 2.40.30.120 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses 0.55 43.0 4.32e-01 90.5% 80.7%
1yleA02 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.55 33.0 3.92e-01 90.5% 95.4%
2eqjA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 31.0 3.78e-01 84.8% 87.9%
1mhnA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 31.0 3.93e-01 82.9% 98.3%
3ntkA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 28.0 3.23e-01 81.0% 66.3%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 31.0 3.95e-01 82.9% 96.8%
1aw8B00 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.54 41.0 4.38e-01 99.0% 96.7%
5kcoA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 29.0 3.64e-01 78.1% 91.5%
2z3gB00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.53 36.0 3.45e-01 87.6% 58.3%
3fgeA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 43.0 3.63e-01 86.7% 65.1%
2digA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 30.0 3.64e-01 82.9% 85.3%
5ygbA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 31.0 3.57e-01 81.0% 77.5%
3askA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.52 31.0 3.90e-01 81.9% 100.0%
4n0rA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 35.0 3.77e-01 100.0% 84.7%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.52 34.0 3.78e-01 86.7% 89.6%
1y71A00 2.30.30.430 Mainly Beta › Roll › SH3 type barrels. › Kinase associated protein B domain 0.52 31.0 3.15e-01 81.0% 58.7%
3ougA00 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.51 41.0 4.09e-01 98.1% 84.9%
5choF00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 41.0 3.58e-01 86.7% 68.1%
1ca1A02 2.60.60.20 Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain 0.51 40.0 3.92e-01 100.0% 75.8%
1uscA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 41.0 3.46e-01 86.7% 59.0%
2d5mA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 40.0 3.41e-01 87.6% 60.7%
3cddA01 2.30.300.10 Mainly Beta › Roll › Phage tail proteins - horseshoe like beta roll fold › Baseplate protein-like domain - beta roll fold 0.50 39.0 3.25e-01 82.9% 74.5%
5z0uA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 39.0 3.73e-01 100.0% 71.8%
ECOD (60)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4162532 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.82 47.0 5.50e-01 90.5% 80.0%
4403870 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.82 47.0 4.92e-01 90.5% 63.2%
3720023 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.76 54.0 5.59e-01 87.6% 77.0%
3605269 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.74 53.0 5.44e-01 88.6% 78.0%
3997045 1.1.7.7 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.72 51.0 5.36e-01 90.5% 81.1%
4108039 1.1.8.5 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.72 50.0 5.45e-01 100.0% 88.2%
3970513 1.1.7.87 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25954 0.69 48.0 5.24e-01 92.4% 88.2%
4072524 1.1.7.88 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25963 0.68 50.0 4.96e-01 91.4% 72.7%
3694265 1.1.7.7 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.67 54.0 4.92e-01 90.5% 65.9%
3262455 1.1.7.90 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ZNFX1 0.67 49.0 5.09e-01 89.5% 81.0%
4608778 1.1.7.107 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25965 0.66 46.0 4.38e-01 91.4% 62.5%
5056905 1.1.7.28 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › HAS-barrel 0.66 47.0 5.00e-01 88.6% 85.6%
4137973 1.1.5.26 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN 0.65 49.0 4.84e-01 94.3% 76.4%
4944212 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.65 47.0 5.05e-01 100.0% 92.0%
3477728 1.1.2.19 beta barrels › cradle loop barrel › RIFT-related › double psi › IML1_N 0.63 42.0 4.44e-01 90.5% 74.7%
3935944 355.1.1.11 few secondary structure elements › Trefoil/Plexin domain-like › Trefoil/Plexin domain-like › Trefoil/Plexin domain-like › TIG_plexin 0.62 49.0 4.85e-01 100.0% 80.0%
4986552 11.1.1.1410 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CarboxypepD_reg 0.62 42.0 4.56e-01 100.0% 82.2%
3993757 11.1.1.247 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TIG_plexin 0.62 46.0 4.69e-01 100.0% 81.0%
3196339 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.61 47.0 4.41e-01 90.5% 66.2%
2877595 11.1.1.178 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_2 0.61 40.0 4.36e-01 97.1% 81.4%
3724971 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.60 47.0 4.70e-01 90.5% 80.0%
3818428 4.1.1.66 beta barrels › SH3 › SH3 › SH3 › LBR_tudor 0.60 36.0 4.16e-01 84.8% 84.0%
4020238 1.1.7.4 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_1 0.59 49.0 4.37e-01 89.5% 72.7%
3368254 4.1.1.141 beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor 0.59 32.0 4.24e-01 79.0% 100.0%
5061247 11.1.1.237 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › MG4 0.59 41.0 4.26e-01 98.1% 75.0%
3342430 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 35.0 4.04e-01 82.9% 81.3%
4266069 1.1.7.88 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25963 0.58 48.0 4.82e-01 86.7% 89.5%
3971620 1.1.7.88 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25963 0.58 49.0 4.38e-01 91.4% 70.0%
4396535 1.1.2.0 beta barrels › cradle loop barrel › RIFT-related › double psi 0.58 38.0 4.28e-01 88.6% 88.7%
4970102 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.58 40.0 4.32e-01 100.0% 84.4%
4391878 1.1.7.88 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25963 0.57 49.0 4.32e-01 93.3% 72.9%
5011662 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.57 48.0 4.22e-01 89.5% 74.7%
3575737 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 45.0 4.76e-01 99.0% 100.0%
5007131 1.1.7.28 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › HAS-barrel 0.57 41.0 4.31e-01 91.4% 85.3%
4943011 4.11.1.2 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.56 34.0 3.60e-01 81.9% 66.3%
3330943 4.1.1.43 beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.56 30.0 4.02e-01 82.9% 100.0%
3303889 4.1.1.141 beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor 0.56 36.0 4.13e-01 86.7% 90.7%
3294392 4.1.1.43 beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.56 31.0 3.41e-01 81.9% 65.9%
4981433 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 44.0 4.58e-01 100.0% 89.0%
3997949 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.56 32.0 3.41e-01 81.9% 64.4%
3502086 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.55 28.0 3.61e-01 82.9% 89.1%
3924975 4.1.1.377 beta barrels › SH3 › SH3 › SH3 › MSL3_chromo-like 0.55 35.0 3.93e-01 81.9% 82.5%
3649435 2.1.1.9 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S4e 0.55 26.0 2.47e-01 90.5% 33.1%
4944075 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 42.0 4.25e-01 100.0% 82.9%
5069800 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.55 43.0 4.54e-01 100.0% 92.6%
3547093 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.55 30.0 3.24e-01 81.0% 62.2%
3407820 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.54 30.0 3.27e-01 81.9% 64.7%
3792195 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.54 33.0 3.38e-01 82.9% 63.0%
3824346 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.54 37.0 4.15e-01 87.6% 92.5%
3732816 11.1.1.54 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CBM_21 0.54 43.0 4.05e-01 99.0% 71.5%
3251940 4.1.1.51 beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.53 32.0 3.68e-01 83.8% 82.7%
3926175 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.53 31.0 3.43e-01 82.9% 70.6%
5029740 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 41.0 4.31e-01 98.1% 95.8%
3908017 4.1.1.253 beta barrels › SH3 › SH3 › SH3 › DUF4537 0.51 36.0 4.03e-01 85.7% 93.8%
4981114 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 38.0 3.82e-01 100.0% 76.4%
4936291 4.1.1.487 beta barrels › SH3 › SH3 › SH3 › DUF7205 0.51 29.0 3.48e-01 86.7% 89.2%
3176265 4.11.1.1 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.50 35.0 3.07e-01 84.8% 47.7%
4932286 4.1.1.19 beta barrels › SH3 › SH3 › SH3 › LSM 0.50 33.0 3.78e-01 83.8% 95.9%
3960362 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.50 43.0 4.17e-01 98.1% 84.3%
4300895 4.11.1.6 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › PF31032 0.50 33.0 3.08e-01 83.8% 50.7%