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Ig8144_scaffold_2_curated_closed_complete_start-adj_prodigal-single.1__X__X__00052

Bact-Vir

Ig8144_scaffold_2_curated_closed_complete_start-adj_prodigal-single.1__X__X__00052

Identity

Kingdom:
phage

Quality

59.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 21-62
PDB
Domain cluster: representative
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3hshE00 3.40.1620.70 Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › 0.74 60.0 5.58e-01 100.0% 72.7%
3n3fA01 3.40.1620.70 Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › 0.66 54.0 5.41e-01 100.0% 95.3%
1yu0A01 2.10.10.30 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › 0.66 53.0 5.08e-01 100.0% 78.4%
4dunA01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.61 47.0 3.49e-01 92.9% 50.4%
1ym5A01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.59 48.0 3.50e-01 100.0% 44.9%
4bndA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.58 46.0 3.29e-01 100.0% 30.8%
6inxA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.58 40.0 3.49e-01 71.4% 80.0%
3tw8A02 3.40.50.11500 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › DENN domain, C-terminal lobe 0.57 41.0 2.89e-01 83.3% 49.4%
1vq8A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 40.0 3.44e-01 90.5% 66.7%
3h09A04 4.10.1240.40 Few Secondary Structures › Irregular › Hormone receptor fold › 0.52 39.0 3.48e-01 90.5% 81.9%
3lmmA03 3.30.565.60 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › 0.52 43.0 2.96e-01 100.0% 94.7%
1e6vC00 3.90.320.20 Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › Methyl-coenzyme M reductase, gamma subunit 0.51 42.0 2.57e-01 100.0% 15.3%
2y8nB01 2.20.70.100 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.51 34.0 3.44e-01 81.0% 69.0%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2495545 207.2.1.22 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix 0.80 65.0 3.67e-01 100.0% 8.4%
3623217 3761.1.1.2 beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Collagen_trimer 0.78 65.0 6.21e-01 100.0% 80.0%
3917719 3761.1.1.2 beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Collagen_trimer 0.75 63.0 6.20e-01 100.0% 88.9%
3921177 3761.1.1.0 beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related 0.75 59.0 5.37e-01 100.0% 65.5%
3528795 3761.1.1.0 beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related 0.74 57.0 5.67e-01 100.0% 82.2%
3900165 3761.1.1.2 beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Collagen_trimer 0.74 62.0 6.21e-01 100.0% 93.0%
1505155 3761.1.1.2 beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Collagen_trimer 0.74 60.0 5.57e-01 100.0% 71.4%
3405960 3761.1.1.2 beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Collagen_trimer 0.73 62.0 6.24e-01 100.0% 95.3%
3987740 3761.1.1.0 beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related 0.72 56.0 5.70e-01 100.0% 90.0%
4512216 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.72 50.0 4.80e-01 78.6% 62.0%
3271846 391.1.2.0 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related 0.66 48.0 4.44e-01 83.3% 60.0%
1281772 3761.1.1.2 beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Collagen_trimer 0.66 54.0 5.08e-01 100.0% 75.9%
1107990 3761.1.1.1 beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Mtd_N 0.66 53.0 5.11e-01 100.0% 80.0%
4578847 702.1.1.3 beta duplicates or obligate multimers › beta-hairpin stack › beta-hairpin stack › beta-hairpin stack › Choline_bind_1,Choline_bind_2 0.65 54.0 3.19e-01 100.0% 17.4%
4889694 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.61 45.0 4.15e-01 83.3% 78.0%
2075817 2006.1.1.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like 0.59 48.0 3.98e-01 100.0% 54.7%
5002640 3761.1.1.1 beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Mtd_N 0.59 47.0 4.57e-01 100.0% 88.0%
3967702 286.1.1.2 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF 0.58 46.0 3.44e-01 95.2% 52.8%
4114361 284.2.1.0 a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain 0.56 39.0 3.87e-01 73.8% 80.0%
3767059 101.1.2.506 alpha arrays › HTH › HTH › winged helix domain › HTH_NWD1 0.56 42.0 3.02e-01 88.1% 72.4%
3790194 284.2.1.0 a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain 0.55 39.0 3.84e-01 76.2% 100.0%
3239613 384.1.1.1 few secondary structure elements › BPTI-like › BPTI-like › BPTI-like › Kunitz_BPTI 0.53 38.0 3.46e-01 88.1% 53.1%
D2 medium residues 199-252
PDB
D3 medium residues 253-308
PDB
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2o5nA02 3.30.500.30 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › 0.68 55.0 3.94e-01 87.5% 70.1%
4g59C02 3.30.500.30 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › 0.66 53.0 3.82e-01 87.5% 69.6%
3l9rA01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.64 50.0 3.56e-01 87.5% 71.4%
1q7hA01 3.10.450.120 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Pre-PUA domain; domain 1 0.60 47.0 4.47e-01 85.7% 89.2%
1pqzA01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.59 43.0 3.28e-01 78.6% 32.8%
3ohsX02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.57 44.0 3.08e-01 87.5% 57.1%
1ex4B02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.56 39.0 3.91e-01 75.0% 93.2%
3d79A01 3.10.450.120 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Pre-PUA domain; domain 1 0.56 43.0 3.95e-01 83.9% 94.6%
2jmbA00 2.40.128.290 Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein family Atu4866 0.55 42.0 3.84e-01 85.7% 64.6%
2wm1A00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.55 43.0 2.66e-01 85.7% 85.5%
1vwxp00 2.20.25.30 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.54 37.0 3.18e-01 85.7% 44.0%
6j7cA01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.54 42.0 3.03e-01 85.7% 43.4%
3a9gA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.53 42.0 2.64e-01 89.3% 79.9%
2dk7A00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.53 34.0 3.16e-01 80.4% 49.3%
2jxbA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 36.0 3.19e-01 71.4% 67.4%
1ei5A02 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.53 43.0 3.89e-01 94.6% 96.3%
2nbsA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.53 39.0 3.16e-01 82.1% 77.6%
4cswA02 3.40.366.30 Alpha Beta › 3-Layer(aba) Sandwich › Malonyl-Coenzyme A Acyl Carrier Protein; domain 2 › 50S ribosomal protein L16 arginine hydroxylase; Chain A, Domain 2 0.52 40.0 2.92e-01 87.5% 61.9%
1fx7B03 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.52 41.0 3.66e-01 87.5% 83.7%
1md6A00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.51 36.0 2.77e-01 78.6% 74.7%
4x9cD00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.50 36.0 3.56e-01 82.1% 73.3%
ECOD (45)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4928895 79.1.1.0 beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain 0.85 71.0 4.44e-01 100.0% 18.7%
5075886 243.6.1.1 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › DUF1947 0.75 52.0 4.83e-01 73.2% 87.1%
3980770 79.1.1.0 beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain 0.73 66.0 4.63e-01 98.2% 36.4%
4484870 298.3.1.0 a+b two layers › FwdE/GAPDH domain-like › Serine dehydratase beta chain-like › Serine dehydratase beta chain-like 0.72 54.0 3.98e-01 80.4% 87.6%
4179984 865.1.1.2 beta complex topology › PheT/TilS domain › PheT/TilS domain › PheT/TilS domain › TilS_C 0.71 49.0 3.86e-01 73.2% 85.2%
4946183 243.6.1.12 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › PUA 0.69 48.0 4.33e-01 73.2% 86.7%
327605 233.1.1.8 a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › M157_N_1 0.68 55.0 3.83e-01 87.5% 62.9%
3651990 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.67 46.0 4.57e-01 71.4% 94.8%
4978884 243.6.1.0 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain 0.67 47.0 4.30e-01 73.2% 90.7%
5049994 243.6.1.4 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › Pre-PUA 0.67 46.0 4.24e-01 73.2% 88.0%
3928477 77.3.1.4 beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain › PF28998 0.66 55.0 3.77e-01 100.0% 26.7%
5045984 243.6.1.1 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › DUF1947 0.66 53.0 4.62e-01 87.5% 77.6%
1318713 3894.1.1.2 beta meanders › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › GtfA_EBD 0.65 55.0 4.29e-01 96.4% 82.5%
3268583 243.6.1.4 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › Pre-PUA 0.64 51.0 4.47e-01 87.5% 84.7%
5003057 243.6.1.0 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain 0.64 46.0 4.24e-01 75.0% 90.0%
4026913 243.6.1.4 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › Pre-PUA 0.64 51.0 4.44e-01 87.5% 84.7%
4965319 241.11.1.3 a+b two layers › Type III secretory system chaperone-like › YjbR-like › YjbR-like › Luciferase 0.64 43.0 3.26e-01 71.4% 45.9%
4971539 243.6.1.1 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › DUF1947 0.64 45.0 4.08e-01 73.2% 90.7%
4165617 865.1.1.0 beta complex topology › PheT/TilS domain › PheT/TilS domain › PheT/TilS domain 0.64 55.0 4.19e-01 94.6% 83.2%
5034935 243.6.1.9 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › TGT_C2 0.63 43.0 4.01e-01 71.4% 85.7%
4431016 865.1.1.0 beta complex topology › PheT/TilS domain › PheT/TilS domain › PheT/TilS domain 0.62 53.0 4.13e-01 94.6% 85.0%
5067171 243.6.1.1 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › DUF1947 0.62 42.0 4.10e-01 73.2% 87.7%
4974000 243.6.1.0 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain 0.62 43.0 4.14e-01 73.2% 90.8%
3511988 243.6.1.4 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › Pre-PUA 0.61 49.0 4.19e-01 87.5% 81.1%
142988 243.6.1.4 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › Pre-PUA 0.61 48.0 4.14e-01 87.5% 79.1%
4981259 243.6.1.1 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › DUF1947 0.61 46.0 4.45e-01 83.9% 90.8%
3480412 243.6.1.0 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain 0.60 47.0 4.10e-01 87.5% 81.1%
4952432 243.6.1.1 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › DUF1947 0.60 47.0 4.39e-01 85.7% 87.1%
3262209 243.6.1.4 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › Pre-PUA 0.60 48.0 4.13e-01 89.3% 80.0%
3573633 5.1.3.12 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Str_synth 0.59 44.0 2.76e-01 80.4% 25.7%
4934918 331.2.1.0 a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain 0.59 46.0 4.23e-01 94.6% 65.7%
4969302 243.6.1.0 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain 0.59 47.0 4.35e-01 87.5% 88.6%
5030565 243.6.1.1 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › DUF1947 0.57 44.0 4.15e-01 85.7% 92.9%
5058991 243.6.1.1 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › DUF1947 0.57 46.0 4.27e-01 87.5% 88.6%
3633088 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 49.0 2.98e-01 98.2% 40.8%
1164615 243.6.1.1 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › DUF1947 0.56 43.0 3.89e-01 83.9% 89.7%
5013346 241.1.1.30 a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › PF26556 0.55 39.0 3.03e-01 78.6% 71.4%
5078933 2484.1.1.43 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 0.54 41.0 2.73e-01 82.1% 26.2%
5021241 243.6.1.0 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain 0.54 41.0 3.85e-01 83.9% 88.6%
3964807 9.7.1.2 beta barrels › Lipocalins/Streptavidin › Metalloprotease inhibitor › Metalloprotease inhibitor › PF28291 0.52 44.0 3.81e-01 100.0% 67.4%
3447916 207.1.1.171 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_RPS2, LRR_R13L1-DRL21 0.52 44.0 2.85e-01 100.0% 36.9%
5047980 12.3.1.0 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.52 45.0 2.82e-01 96.4% 63.5%
5080766 243.6.1.0 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain 0.52 40.0 3.81e-01 87.5% 90.0%
5028391 375.1.1.13 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Ribosomal_L37ae 0.51 35.0 3.02e-01 85.7% 43.0%
4250705 6.1.1.19 beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › RicinB_lectin_2 0.50 39.0 3.05e-01 92.9% 94.8%
D4 medium residues 328-413
PDB
D5 medium residues 429-503
PDB