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Ig8144_scaffold_2_curated_closed_complete_start-adj_prodigal-single.1__X__X__00310

Bact-Vir

Ig8144_scaffold_2_curated_closed_complete_start-adj_prodigal-single.1__X__X__00310

Identity

Kingdom:
phage

Quality

89.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-61
PDB
Domain cluster: representative
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1o7dC01 1.20.1270.50 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Glycoside hydrolase family 38, central domain 0.78 61.0 6.09e-01 84.7% 83.6%
3rfwA01 1.10.8.1040 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.76 53.0 5.32e-01 72.9% 70.5%
2kiwA01 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.67 47.0 4.12e-01 72.9% 98.8%
4lctB00 1.25.40.570 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.66 54.0 3.30e-01 88.1% 16.7%
D2 high residues 100-214
PDB
Domain cluster: rep: SR-VP_0-2_scaffold_141_4750547_curated_closed_complete_prodigal-single.1__X__X__00227__D81-193
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1h6lA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.58 44.0 3.17e-01 81.7% 89.0%
1aisA02 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.56 28.0 3.18e-01 90.4% 62.1%
8f5pC01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 40.0 3.00e-01 76.5% 86.7%
4g7nA02 3.30.1120.130 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.54 30.0 3.20e-01 84.3% 59.8%
4mi7A00 3.90.70.170 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.53 42.0 4.11e-01 88.7% 78.2%
5cirE02 2.10.50.10 Mainly Beta › Ribbon › Tumor Necrosis Factor Receptor, subunit A; domain 2 › Tumor Necrosis Factor Receptor, subunit A, domain 2 0.53 19.0 3.01e-01 87.8% 87.5%
3juuA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 44.0 3.46e-01 94.8% 75.7%
4py5A01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.52 27.0 3.25e-01 89.6% 76.4%
4qt6A00 2.60.120.920 Mainly Beta › Sandwich › Jelly Rolls › SPRY domain 0.51 44.0 3.99e-01 96.5% 84.3%
4r7rA00 3.30.1490.410 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Uncharacterised protein PF16224, DUF4883 0.51 39.0 3.82e-01 85.2% 74.6%
3exmA01 2.40.380.10 Mainly Beta › Beta Barrel › FomD barrel-like fold › FomD-like 0.50 39.0 3.31e-01 83.5% 70.8%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3715045 292.2.1.0 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.65 36.0 4.47e-01 80.0% 88.6%
4041829 219.1.1.21 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C58 0.57 49.0 3.93e-01 94.8% 48.9%
3742835 5.1.5.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.56 41.0 2.92e-01 75.7% 78.1%
3904209 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 40.0 2.98e-01 78.3% 87.6%
3924545 214.1.1.0 ↗ a+b two layers › SH2 › SH2 › SH2 0.53 45.0 4.50e-01 100.0% 88.3%
3496948 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.53 39.0 2.86e-01 76.5% 89.8%
3393182 10.1.1.23 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Neuralized 0.51 42.0 3.70e-01 93.0% 92.4%