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Ig8144_scaffold_2_curated_closed_complete_start-adj_prodigal-single.1__X__X__00332

Bact-Vir

Ig8144_scaffold_2_curated_closed_complete_start-adj_prodigal-single.1__X__X__00332

Identity

Kingdom:
phage

Quality

89.0 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-49
PDB
CATH (72)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1s5uE00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.74 63.0 4.56e-01 100.0% 66.2%
3g0kA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.74 61.0 4.54e-01 100.0% 64.1%
4a9cA00 3.60.10.10 Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase 0.73 58.0 3.58e-01 97.8% 14.5%
1q4tA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.73 61.0 4.44e-01 100.0% 58.5%
3w7bA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.71 46.0 3.72e-01 82.6% 35.2%
3f14A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.69 58.0 4.48e-01 100.0% 69.6%
2q78F00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.69 57.0 4.22e-01 100.0% 60.3%
2egjA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.69 56.0 4.26e-01 100.0% 71.4%
1njkA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.69 57.0 4.24e-01 100.0% 67.7%
4r80A00 3.10.450.630 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.68 56.0 4.86e-01 100.0% 57.9%
2v8hA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.68 55.0 4.20e-01 95.7% 44.0%
1i1iP02 3.40.390.10 Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › Collagenase (Catalytic Domain) 0.68 54.0 3.75e-01 89.1% 27.2%
3n5fA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.67 55.0 4.23e-01 95.7% 44.7%
3gekA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.67 55.0 4.14e-01 100.0% 63.4%
3ep6B01 3.30.360.50 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › S-adenosylmethionine decarboxylase 0.66 47.0 4.84e-01 91.3% 85.4%
4pxdA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.65 54.0 4.12e-01 95.7% 45.2%
5cxoB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.65 52.0 3.96e-01 100.0% 69.4%
4pxeA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.65 54.0 4.12e-01 97.8% 44.4%
3bypA00 3.30.70.1350 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cation efflux protein, cytoplasmic domain 0.65 54.0 4.59e-01 100.0% 54.9%
4u13A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.65 54.0 4.23e-01 100.0% 73.4%
2zzeA04 3.30.980.10 Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › Threonyl-trna Synthetase; Chain A, domain 2 0.65 53.0 4.35e-01 97.8% 47.4%
1uyvB02 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.65 49.0 3.04e-01 84.8% 17.2%
6j09A02 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.64 51.0 4.44e-01 93.5% 56.4%
1x49A01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.64 46.0 4.15e-01 80.4% 60.0%
4atnA03 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.64 50.0 3.49e-01 97.8% 24.7%
2lqjA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.63 49.0 4.09e-01 95.7% 45.7%
2mdrA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.63 45.0 3.72e-01 80.4% 43.6%
3h3hB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 49.0 3.83e-01 95.7% 72.5%
1atnD00 3.60.10.10 Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase 0.63 51.0 3.23e-01 95.7% 17.1%
1repC02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 48.0 4.11e-01 95.7% 49.5%
1fs0G01 3.40.1380.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › ATP synthase, F1 complex, gamma subunit 0.62 51.0 3.86e-01 100.0% 79.2%
3bm7A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 49.0 3.99e-01 100.0% 43.4%
1p6vA00 2.40.280.10 Mainly Beta › Beta Barrel › Small Protein B; Chain: A; › Small protein B 0.62 49.0 3.72e-01 95.7% 78.4%
2wbmA03 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 43.0 3.77e-01 95.7% 48.6%
4bkwA03 3.30.500.40 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › 0.60 47.0 3.63e-01 97.8% 36.5%
2qdfA02 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.60 48.0 4.18e-01 100.0% 97.6%
3n79A01 3.30.70.1710 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › BMC (bacterial microcompartment) domain 0.60 41.0 3.55e-01 71.7% 100.0%
1kzfA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.60 42.0 2.80e-01 87.0% 17.7%
5tvoB00 3.30.360.50 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › S-adenosylmethionine decarboxylase 0.60 41.0 3.92e-01 93.5% 57.6%
1z54A00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.59 48.0 3.65e-01 100.0% 68.2%
3d3bJ00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.59 44.0 3.90e-01 95.7% 50.6%
2q7eA02 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.59 50.0 3.31e-01 100.0% 50.9%
1bd3A00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.59 46.0 2.97e-01 87.0% 78.1%
4lb0A02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.59 46.0 3.14e-01 87.0% 95.7%
3voqA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 43.0 3.27e-01 82.6% 66.4%
1j4wA01 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.58 44.0 4.00e-01 95.7% 62.2%
6r77A02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.57 44.0 3.06e-01 87.0% 95.8%
7l1rG01 3.40.1380.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › ATP synthase, F1 complex, gamma subunit 0.57 51.0 3.27e-01 100.0% 91.2%
2hboA01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.57 47.0 3.54e-01 100.0% 60.2%
2l33A00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.57 43.0 3.57e-01 87.0% 49.5%
4iyqA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 41.0 3.32e-01 82.6% 92.5%
4y6iA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 41.0 3.31e-01 82.6% 96.1%
1mhmB00 3.30.360.50 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › S-adenosylmethionine decarboxylase 0.56 39.0 3.84e-01 89.1% 64.8%
4okoA00 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.56 41.0 2.54e-01 87.0% 12.8%
3ke2B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 47.0 3.72e-01 95.7% 97.9%
1p1hB01 3.30.2360.10 Alpha Beta › 2-Layer Sandwich › Glyceraldehyde-3-phosphate dehydrogenase-like fold › Glyceraldehyde-3-phosphate dehydrogenase-like domain 0.56 46.0 3.16e-01 95.7% 36.9%
7kggC02 3.30.2090.10 Alpha Beta › 2-Layer Sandwich › Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains › Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 0.55 44.0 3.64e-01 93.5% 71.7%
7wu7501 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.55 37.0 2.84e-01 71.7% 81.0%
1xttB00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.55 47.0 3.12e-01 100.0% 61.1%
7r97A02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.54 38.0 3.50e-01 78.3% 60.3%
2yweA04 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 37.0 2.96e-01 78.3% 99.1%
1y88A01 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.53 40.0 3.02e-01 87.0% 47.2%
1bm9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 35.0 2.75e-01 71.7% 33.3%
4exrA01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 39.0 3.58e-01 100.0% 56.8%
3m05B01 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 39.0 3.24e-01 87.0% 82.6%
1yk9A00 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.52 39.0 2.83e-01 93.5% 37.5%
3u04A00 3.90.45.10 Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase 0.51 44.0 3.00e-01 100.0% 65.1%
3w9iA08 3.30.2090.10 Alpha Beta › 2-Layer Sandwich › Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains › Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 0.51 40.0 3.36e-01 93.5% 74.2%
6wnsA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.50 39.0 2.73e-01 89.1% 34.2%
1xg9A02 3.10.25.20 Alpha Beta › Roll › Methionyl-tRNA Fmet Formyltransferase; Chain A, domain 2 › 0.50 42.0 3.86e-01 97.8% 79.0%
6k3lB02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.50 37.0 3.16e-01 89.1% 95.6%
3dluA00 3.30.56.30 Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › Signal recognition particle, SRP19-like subunit 0.50 36.0 3.01e-01 84.8% 38.9%
ECOD (78)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4025593 327.6.1.0 a+b two layers › Alpha-lytic protease prodomain-like › Fe-S cluster assembly (FSCA) domain-like › Fe-S cluster assembly (FSCA) domain-like 0.80 66.0 5.56e-01 95.7% 58.7%
4512937 2003.1.5.25 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GidB 0.76 61.0 3.97e-01 91.3% 20.0%
4002439 2003.1.5.73 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_16 0.76 58.0 3.84e-01 93.5% 20.5%
5043125 809.2.1.0 a+b two layers › BLIP-like › BT0923-like › BT0923-like 0.76 61.0 5.54e-01 93.5% 66.2%
3800790 2003.1.5.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.75 58.0 3.83e-01 93.5% 21.1%
5065203 316.1.1.18 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › AbiEii 0.75 60.0 3.81e-01 95.7% 17.0%
5040551 304.8.1.12 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_8 0.74 57.0 5.16e-01 97.8% 61.5%
4939906 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.74 56.0 4.90e-01 95.7% 53.3%
2165976 310.3.1.4 a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related › GspL_C 0.73 55.0 4.70e-01 95.7% 48.8%
3247031 708.1.1.0 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.72 56.0 4.39e-01 89.1% 88.6%
3392320 304.166.1.9 a+b two layers › Alpha-beta plaits › Nup54 ferredoxin-like domain › Nup54 ferredoxin-like domain › PF29949 0.72 60.0 4.62e-01 100.0% 41.7%
4253075 304.156.1.1 a+b two layers › Alpha-beta plaits › DNA translocase FtsK N-terminal domain › DNA translocase FtsK N-terminal domain › FtsK_alpha 0.71 55.0 4.45e-01 100.0% 42.0%
3732434 304.25.1.1 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.71 58.0 4.17e-01 95.7% 35.2%
3772995 304.166.1.9 a+b two layers › Alpha-beta plaits › Nup54 ferredoxin-like domain › Nup54 ferredoxin-like domain › PF29949 0.71 60.0 4.45e-01 100.0% 38.4%
4298643 3281.1.1.2 alpha complex topology › Sodium/proton antiporter subunits-like › Sodium/proton antiporter subunits-like › NADH-quinone oxidoreductase subunit L (NuoL)-related › Proton_antipo_M,Proton_antipo_N 0.71 54.0 3.04e-01 84.8% 29.6%
3693212 304.25.1.0 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain 0.71 57.0 4.10e-01 95.7% 34.0%
4154033 3281.1.1.2 alpha complex topology › Sodium/proton antiporter subunits-like › Sodium/proton antiporter subunits-like › NADH-quinone oxidoreductase subunit L (NuoL)-related › Proton_antipo_M,Proton_antipo_N 0.70 53.0 3.03e-01 84.8% 30.5%
3196674 304.25.1.1 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.69 57.0 4.28e-01 95.7% 42.5%
3791595 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.69 53.0 4.29e-01 95.7% 41.0%
4956551 2003.1.5.46 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MTS 0.69 54.0 3.59e-01 87.0% 22.3%
3635748 304.25.1.0 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain 0.69 57.0 4.25e-01 95.7% 42.5%
4898995 3121.1.1.1 a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › POTRA 0.68 57.0 4.71e-01 100.0% 52.2%
3960213 304.156.1.5 a+b two layers › Alpha-beta plaits › DNA translocase FtsK N-terminal domain › DNA translocase FtsK N-terminal domain › PF31086 0.68 55.0 4.29e-01 100.0% 55.7%
3623766 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.68 52.0 4.32e-01 95.7% 45.3%
4516880 304.8.1.74 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › PF26539 0.68 50.0 4.29e-01 95.7% 48.8%
4432583 327.4.1.1 a+b two layers › Alpha-lytic protease prodomain-like › YhbC-like, N-terminal domain › YhbC-like, N-terminal domain › RimP_N 0.67 53.0 4.55e-01 100.0% 52.9%
4975209 2003.1.5.46 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MTS 0.67 51.0 3.32e-01 93.5% 18.7%
3218266 5001.1.1.41 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srw 0.67 49.0 2.94e-01 82.6% 28.5%
3939904 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.66 52.0 2.88e-01 84.8% 8.8%
3238562 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.66 51.0 4.17e-01 100.0% 43.0%
4024485 304.116.1.1 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in release factor › Ferredoxin-like domain in release factor › PCRF 0.66 54.0 4.04e-01 93.5% 35.8%
4595166 5076.2.1.0 alpha complex topology › Mitochondrial ADP/ATP carrier-like › Putative sulfate permease CysZ › Putative sulfate permease CysZ 0.65 53.0 3.45e-01 93.5% 26.2%
5310 304.25.1.1 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.65 53.0 4.06e-01 95.7% 44.4%
3728906 304.25.1.1 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.65 54.0 4.13e-01 97.8% 42.6%
3508781 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.65 52.0 4.40e-01 100.0% 97.8%
3509755 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.65 55.0 3.85e-01 95.7% 36.7%
4005147 2011.1.1.23 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › M20_dimer 0.64 53.0 4.09e-01 97.8% 44.3%
4928724 2003.1.5.46 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MTS 0.64 46.0 3.26e-01 84.8% 22.4%
3872425 109.3.1.10 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank_4 0.64 47.0 2.72e-01 80.4% 32.8%
3684969 304.25.1.0 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain 0.64 53.0 4.08e-01 97.8% 42.6%
3328759 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.64 44.0 3.90e-01 78.3% 46.7%
5080814 304.8.1.5 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NIL 0.64 46.0 4.18e-01 95.7% 54.3%
4963939 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.64 46.0 4.24e-01 82.6% 60.0%
3224634 5001.1.1.41 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srw 0.63 49.0 2.95e-01 91.3% 25.9%
5016148 304.126.1.0 a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C 0.63 50.0 4.10e-01 95.7% 47.4%
4985149 222.1.1.8 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT_2 0.62 49.0 3.74e-01 100.0% 68.1%
3164354 205.1.1.0 a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin 0.62 44.0 2.96e-01 78.3% 23.7%
5053933 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.61 47.0 4.32e-01 97.8% 63.1%
5051923 304.8.1.12 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_8 0.61 45.0 4.26e-01 100.0% 65.0%
3388233 7579.1.1.0 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases 0.61 46.0 2.94e-01 93.5% 14.7%
4299747 3281.1.1.1 alpha complex topology › Sodium/proton antiporter subunits-like › Sodium/proton antiporter subunits-like › NADH-quinone oxidoreductase subunit L (NuoL)-related › Proton_antipo_M 0.61 51.0 2.96e-01 100.0% 81.0%
3423942 304.8.1.45 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant 0.61 48.0 4.26e-01 100.0% 58.7%
4093835 2.21.1.1 beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) › SmpB 0.60 47.0 3.63e-01 93.5% 82.5%
5055419 304.8.1.5 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NIL 0.60 43.0 3.90e-01 93.5% 52.9%
5052672 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.60 44.0 4.05e-01 95.7% 57.1%
3472642 3937.1.1.2 alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 › Innexin 0.60 50.0 2.97e-01 95.7% 51.6%
3446538 5061.1.1.1 alpha complex topology › Preprotein translocase SecY subunit › Preprotein translocase SecY subunit › Preprotein translocase SecY subunit › SecY 0.60 45.0 2.63e-01 84.8% 13.0%
4965095 304.44.1.1 a+b two layers › Alpha-beta plaits › Ribosomal protein S10 › Ribosomal protein S10 › Ribosomal_S10 0.59 45.0 3.88e-01 95.7% 49.4%
3655568 304.20.1.0 a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain 0.59 46.0 3.65e-01 100.0% 40.0%
3720487 304.25.1.1 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.58 45.0 3.57e-01 100.0% 42.5%
3410993 4070.1.1.2 alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like › Peptidase_M50 0.57 44.0 2.99e-01 100.0% 20.2%
3596985 304.24.1.0 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.57 40.0 3.15e-01 78.3% 69.6%
3506045 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.57 42.0 2.91e-01 84.8% 22.2%
4938493 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 39.0 3.06e-01 71.7% 56.2%
2886368 304.116.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in release factor › Ferredoxin-like domain in release factor 0.56 47.0 3.70e-01 97.8% 43.6%
3935690 101.1.2.111 alpha arrays › HTH › HTH › winged helix domain › RQC 0.55 41.0 3.08e-01 84.8% 97.7%
3604394 218.4.1.1 a+b two layers › Enolase-N/ribosomal protein › Dhaf4260 N-terminal domain › Dhaf4260 N-terminal domain › DUF4213 0.55 38.0 3.15e-01 78.3% 35.0%
3987501 222.1.1.4 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT 0.55 43.0 3.43e-01 97.8% 69.6%
3709607 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.54 44.0 3.03e-01 93.5% 33.7%
4941691 2008.1.1.16 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Mrr_cat 0.53 42.0 3.01e-01 95.7% 27.9%
3368713 304.8.1.45 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant 0.53 40.0 3.59e-01 91.3% 58.7%
3193113 5051.1.1.10 alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › AA_permease_2 0.53 44.0 2.57e-01 100.0% 84.0%
5076295 2008.1.1.107 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NERD 0.53 45.0 3.27e-01 97.8% 56.3%
3428560 263.1.1.1 a+b three layers › SRF-like › SRF-like › SRF-like › SRF-TF 0.53 44.0 4.19e-01 97.8% 78.2%
2409804 3077.1.1.1 beta sandwiches › Heme-binding protein HmuY-related › Heme-binding protein HmuY-related › Heme-binding protein HmuY-related › HmuY 0.53 41.0 2.88e-01 95.7% 73.8%
4947208 304.134.1.2 a+b two layers › Alpha-beta plaits › MJ1480-like › MJ1480-like › ArgZ-like_C_1st 0.52 40.0 3.62e-01 95.7% 58.7%
1787990 2003.1.2.49 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_2+FAD_binding_3 0.52 37.0 2.61e-01 78.3% 89.8%
5056444 2002.1.1.29 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DHDPS 0.50 40.0 2.43e-01 91.3% 46.1%
D2 high residues 54-135
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF27402.1 best Y4mA_C 30.6 3.80e-07 85.4% 90.1%
CATH (32)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2eqjA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 47.0 5.14e-01 75.6% 86.4%
2lqkA00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.70 48.0 5.11e-01 70.7% 90.0%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 48.0 5.47e-01 72.0% 96.8%
5kcoA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 46.0 5.26e-01 75.6% 96.6%
7razA01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.68 47.0 4.65e-01 78.0% 68.2%
2digA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 48.0 5.23e-01 84.1% 89.7%
6az1E03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.65 44.0 4.68e-01 72.0% 79.2%
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 45.0 4.82e-01 75.6% 84.1%
2x5cA01 3.30.70.3590 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.63 50.0 4.88e-01 86.6% 86.8%
3oymA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 42.0 4.54e-01 70.7% 92.9%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.61 48.0 4.93e-01 84.1% 92.2%
2qc5A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.61 44.0 3.05e-01 78.0% 51.3%
2dk3A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 46.0 4.62e-01 82.9% 90.7%
3b79A00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.60 44.0 3.84e-01 81.7% 51.2%
4mi7A00 3.90.70.170 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.60 48.0 4.17e-01 86.6% 77.4%
3pijA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.59 43.0 2.82e-01 78.0% 41.2%
2dl5A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 44.0 4.53e-01 85.4% 85.9%
2rsvA00 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.57 45.0 2.92e-01 86.6% 27.3%
4uopA01 3.30.1120.170 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.57 35.0 3.45e-01 86.6% 54.8%
1ssfA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 36.0 4.15e-01 85.4% 96.4%
2f4qA01 3.30.66.10 Alpha Beta › 2-Layer Sandwich › Viral Topoisomerase I › DNA topoisomerase I domain 0.56 33.0 3.56e-01 73.2% 68.1%
3c6fA02 3.30.240.20 Alpha Beta › 2-Layer Sandwich › CRO Repressor › bsu07140 like domains 0.55 29.0 3.26e-01 81.7% 63.5%
6j5cA02 3.30.67.10 Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 0.55 40.0 4.04e-01 90.2% 77.1%
1eigA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 43.0 4.52e-01 96.3% 95.9%
3c96A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 41.0 3.29e-01 82.9% 67.9%
2ct4A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 39.0 4.15e-01 95.1% 91.4%
3ab1A02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 43.0 3.80e-01 89.0% 96.8%
1vccA00 3.30.66.10 Alpha Beta › 2-Layer Sandwich › Viral Topoisomerase I › DNA topoisomerase I domain 0.53 38.0 3.93e-01 75.6% 81.8%
4yliE00 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.51 39.0 3.30e-01 84.1% 72.5%
2zkmX01 2.30.29.240 Mainly Beta › Roll › PH-domain like › 0.51 40.0 3.06e-01 86.6% 53.4%
2vknA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 38.0 4.13e-01 90.2% 98.5%
2d9xA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 39.0 3.63e-01 86.6% 79.1%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3363360 4.1.1.141 beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor 0.77 51.0 5.09e-01 72.0% 65.9%
3660755 4.8.1.21 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › PTM_DIR17_Tudor 0.76 52.0 5.42e-01 78.0% 76.0%
2427475 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.76 50.0 5.55e-01 74.4% 83.6%
4027502 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.75 57.0 6.31e-01 78.0% 100.0%
3173941 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 50.0 4.67e-01 75.6% 58.0%
3834303 109.4.1.257 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PDS5 0.71 47.0 2.88e-01 76.8% 12.1%
3950193 4.1.1.137 beta barrels › SH3 › SH3 › SH3 › PcrA_UvrD_tudor 0.71 45.0 5.45e-01 72.0% 100.0%
3964666 4.1.1.137 beta barrels › SH3 › SH3 › SH3 › PcrA_UvrD_tudor 0.71 50.0 5.64e-01 89.0% 100.0%
3169636 4.1.1.18 beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.70 54.0 5.34e-01 81.7% 98.8%
2727964 4.1.1.105 beta barrels › SH3 › SH3 › SH3 › DUF5604 0.69 48.0 5.47e-01 78.0% 100.0%
3837995 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 45.0 5.23e-01 75.6% 100.0%
3558188 4.1.1.101 beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.69 46.0 4.83e-01 79.3% 76.0%
3764432 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 45.0 4.99e-01 70.7% 84.6%
3855038 4.1.1.105 beta barrels › SH3 › SH3 › SH3 › DUF5604 0.68 47.0 3.78e-01 78.0% 36.9%
3793212 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 51.0 4.46e-01 79.3% 85.8%
4161673 4.1.1.105 beta barrels › SH3 › SH3 › SH3 › DUF5604 0.68 47.0 4.72e-01 82.9% 70.6%
3588979 4.1.1.137 beta barrels › SH3 › SH3 › SH3 › PcrA_UvrD_tudor 0.67 44.0 5.09e-01 72.0% 93.2%
598 4.1.1.68 beta barrels › SH3 › SH3 › SH3 › YorP 0.67 50.0 5.39e-01 79.3% 91.5%
3741020 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 48.0 5.10e-01 76.8% 87.1%
3533770 4.1.1.101 beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.67 47.0 4.33e-01 80.5% 57.1%
3616769 4.1.1.287 beta barrels › SH3 › SH3 › SH3 › DUF5641 0.66 46.0 4.35e-01 70.7% 65.3%
3782038 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 47.0 4.47e-01 79.3% 62.0%
3300051 4.1.1.141 beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor 0.66 55.0 5.71e-01 90.2% 97.3%
4960540 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 47.0 5.16e-01 74.4% 100.0%
3581336 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 49.0 4.45e-01 80.5% 75.5%
4284709 4.1.1.111 beta barrels › SH3 › SH3 › SH3 › Tudor_RapA 0.64 42.0 4.87e-01 74.4% 100.0%
5000741 4.17.1.1 beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.63 46.0 5.04e-01 82.9% 98.5%
3553983 4.1.1.233 beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N 0.62 44.0 4.95e-01 74.4% 100.0%
4368811 4.1.1.364 beta barrels › SH3 › SH3 › SH3 › GatD_N 0.62 40.0 4.65e-01 70.7% 96.4%
4071824 4.17.1.1 beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.61 47.0 4.94e-01 84.1% 94.7%
4944045 4.17.1.2 beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › Asparaginase 0.61 47.0 4.97e-01 81.7% 97.1%
3954050 4.1.1.356 beta barrels › SH3 › SH3 › SH3 › PF26090 0.61 43.0 4.06e-01 78.0% 59.0%
5050320 4.17.1.1 beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.60 49.0 5.06e-01 87.8% 98.7%
5056826 4.17.1.1 beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.60 44.0 4.79e-01 79.3% 96.9%
4971470 4.17.1.1 beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.60 49.0 5.08e-01 89.0% 98.7%
5028741 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 39.0 4.55e-01 79.3% 100.0%
185067 219.1.1.18 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 0.60 44.0 3.85e-01 81.7% 51.6%
3425564 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.60 50.0 3.07e-01 92.7% 94.3%
3850775 4.1.1.101 beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.60 44.0 4.76e-01 100.0% 100.0%
4948433 4.17.1.1 beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.59 46.0 4.93e-01 81.7% 100.0%
3641570 3131.1.1.1 a+b two layers › FYR domain › FYR domain › FYR domain › FYRN,FYRC 0.58 49.0 4.09e-01 95.1% 91.3%
3725260 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.58 40.0 4.33e-01 73.2% 88.6%
5080723 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.56 40.0 3.32e-01 75.6% 64.5%
3485745 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.56 39.0 4.33e-01 72.0% 100.0%
3389803 5.1.4.651 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Med16_N, Med16_C 0.56 41.0 2.51e-01 78.0% 50.4%
3434770 3556.1.1.1 a+b two layers › Uncharacterized Protein Rru_A0810 › Uncharacterized Protein Rru_A0810 › Uncharacterized Protein Rru_A0810 › DUF3223 0.56 40.0 3.67e-01 74.4% 75.2%
5080336 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.56 41.0 4.47e-01 80.5% 100.0%
3174977 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.55 46.0 4.38e-01 90.2% 86.3%
3346946 3556.1.1.1 a+b two layers › Uncharacterized Protein Rru_A0810 › Uncharacterized Protein Rru_A0810 › Uncharacterized Protein Rru_A0810 › DUF3223 0.55 39.0 3.59e-01 76.8% 69.9%
3775592 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.55 40.0 2.17e-01 78.0% 80.7%
3924808 719.2.1.0 beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like 0.52 39.0 3.93e-01 80.5% 95.0%
3416297 7502.1.1.1 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.52 39.0 3.63e-01 82.9% 83.6%
5022489 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.51 43.0 2.75e-01 96.3% 90.8%
3947959 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.51 42.0 3.93e-01 89.0% 90.0%