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Ig8144_scaffold_2_curated_closed_complete_start-adj_prodigal-single.1__X__X__00338
Bact-VirIg8144_scaffold_2_curated_closed_complete_start-adj_prodigal-single.1__X__X__00338
Identity
- Kingdom:
- phage
Quality
63.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 63-171
Domain cluster:
representative
CATH (30)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4htgA03 | 3.30.160.40 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain | 0.67 | 47.0 | 5.34e-01 | 94.5% | 98.7% |
| 1mmuA00 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.67 | 52.0 | 3.61e-01 | 80.7% | 98.8% |
| 3gkeA02 | 3.90.380.10 | Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 | 0.65 | 52.0 | 4.22e-01 | 86.2% | 71.9% |
| 2z4hA01 | 2.40.128.300 | Mainly Beta › Beta Barrel › Lipocalin › NlpE, N-terminal domain | 0.64 | 40.0 | 4.69e-01 | 89.0% | 87.3% |
| 2k4vA00 | 3.30.160.370 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Domain of unknown function DUF5064 | 0.64 | 48.0 | 4.59e-01 | 78.0% | 68.8% |
| 7snsB01 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.63 | 47.0 | 4.11e-01 | 78.9% | 100.0% |
| 2g18I00 | 3.40.1500.20 | Alpha Beta › 3-Layer(aba) Sandwich › oxygen-dependent coproporphyrinogen oxidase › | 0.63 | 54.0 | 4.22e-01 | 95.4% | 72.7% |
| 2f2hA01 | 2.60.40.1760 | Mainly Beta › Sandwich › Immunoglobulin-like › glycosyl hydrolase (family 31) | 0.60 | 46.0 | 3.48e-01 | 79.8% | 49.0% |
| 2covG00 | 2.60.40.2450 | Mainly Beta › Sandwich › Immunoglobulin-like › Beta-1,3-xylanase, CBM31 domain | 0.59 | 33.0 | 3.66e-01 | 71.6% | 67.0% |
| 3ci0I00 | 3.30.1300.30 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like | 0.59 | 33.0 | 3.70e-01 | 77.1% | 71.1% |
| 4bs9A05 | 3.30.160.660 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.59 | 43.0 | 4.30e-01 | 98.2% | 73.7% |
| 2mj7A00 | 3.30.310.10 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein | 0.59 | 47.0 | 4.27e-01 | 84.4% | 68.8% |
| 2eenA00 | 2.40.320.10 | Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 | 0.59 | 39.0 | 3.36e-01 | 70.6% | 42.4% |
| 2zylA02 | 3.90.380.10 | Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 | 0.58 | 49.0 | 3.92e-01 | 90.8% | 59.9% |
| 4gzvA00 | 2.40.128.490 | Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein PF14869 family, DUF4488 | 0.58 | 46.0 | 4.24e-01 | 85.3% | 89.9% |
| 3d6xB00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.58 | 43.0 | 3.94e-01 | 78.0% | 95.7% |
| 4kc5C03 | 3.10.129.110 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase | 0.58 | 46.0 | 3.31e-01 | 83.5% | 68.5% |
| 3qszA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.57 | 48.0 | 4.09e-01 | 90.8% | 72.9% |
| 6yfiB01 | 3.30.380.10 | Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein | 0.57 | 44.0 | 4.15e-01 | 83.5% | 90.4% |
| 1x99A00 | 2.60.270.20 | Mainly Beta › Sandwich › Mutm (Fpg) Protein; Chain: A, domain 2 › Cytolysin/lectin | 0.56 | 44.0 | 4.04e-01 | 99.1% | 63.4% |
| 6lpnA03 | 3.30.70.2190 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 41.0 | 4.03e-01 | 75.2% | 82.5% |
| 1yqfB00 | 3.10.280.10 | Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein | 0.56 | 49.0 | 4.12e-01 | 94.5% | 69.5% |
| 7xhlD02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.56 | 46.0 | 3.38e-01 | 89.9% | 72.8% |
| 4innA00 | 2.40.128.520 | Mainly Beta › Beta Barrel › Lipocalin › | 0.55 | 45.0 | 4.10e-01 | 90.8% | 81.5% |
| 7wa9A01 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.54 | 44.0 | 4.06e-01 | 87.2% | 89.4% |
| 5zc1D00 | 3.10.450.10 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.54 | 39.0 | 4.10e-01 | 75.2% | 98.0% |
| 2bklA02 | 2.130.10.120 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain | 0.53 | 39.0 | 2.79e-01 | 77.1% | 40.5% |
| 7c38B01 | 2.120.10.70 | Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin | 0.52 | 43.0 | 3.17e-01 | 92.7% | 92.1% |
| 3wmyA00 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.51 | 43.0 | 3.16e-01 | 91.7% | 92.1% |
| 4exrA02 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 31.0 | 3.66e-01 | 100.0% | 94.4% |
ECOD (31)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3169052 | 3561.1.1.1 ↗ | a+b complex topology › Mediator of RNA polymerase II transcription subunit 17 › Mediator of RNA polymerase II transcription subunit 17 › Mediator of RNA polymerase II transcription subunit 17 › Med17 | 0.71 | 65.0 | 4.14e-01 | 98.2% | 27.5% |
| 4031020 | 12.3.1.3 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Aldose_epim | 0.66 | 51.0 | 3.58e-01 | 81.7% | 95.8% |
| 4121961 | 3561.1.1.1 ↗ | a+b complex topology › Mediator of RNA polymerase II transcription subunit 17 › Mediator of RNA polymerase II transcription subunit 17 › Mediator of RNA polymerase II transcription subunit 17 › Med17 | 0.65 | 58.0 | 3.85e-01 | 96.3% | 27.1% |
| 3440523 | 331.3.1.17 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt | 0.64 | 56.0 | 4.37e-01 | 93.6% | 79.1% |
| 3627952 | 216.1.1.0 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like | 0.64 | 56.0 | 4.51e-01 | 95.4% | 74.8% |
| 4108055 | 9.1.1.9 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › CpeT | 0.64 | 53.0 | 4.40e-01 | 91.7% | 91.5% |
| 3969359 | 12.3.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich | 0.64 | 49.0 | 3.58e-01 | 81.7% | 99.0% |
| 4974435 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.63 | 38.0 | 4.06e-01 | 92.7% | 68.4% |
| 3467472 | 5.1.5.146 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_AT5G49610-like | 0.63 | 45.0 | 3.24e-01 | 74.3% | 42.7% |
| 3666444 | 331.3.1.17 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt | 0.61 | 54.0 | 4.55e-01 | 97.2% | 88.1% |
| 3493866 | 216.1.1.26 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › FmiP_Thoc5 | 0.60 | 48.0 | 4.97e-01 | 89.9% | 88.6% |
| 3207771 | 897.1.1.1 ↗ | a+b two layers › Acidic mitochondrial matrix protein p32-like › Acidic mitochondrial matrix protein p32 › Acidic mitochondrial matrix protein p32 › MAM33 | 0.60 | 53.0 | 4.31e-01 | 94.5% | 71.5% |
| 4216680 | 330.4.1.1 ↗ | a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC | 0.60 | 42.0 | 4.54e-01 | 97.2% | 87.1% |
| 3990957 | 216.1.1.4 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › RWD | 0.60 | 52.0 | 4.91e-01 | 97.2% | 88.1% |
| 4629131 | 9.29.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › VirK › VirK › VirK | 0.59 | 49.0 | 4.71e-01 | 88.1% | 91.1% |
| 2324030 | 9.29.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › VirK › VirK › VirK | 0.59 | 49.0 | 4.72e-01 | 88.1% | 92.5% |
| 3582697 | 7579.1.1.10 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Thioesterase | 0.57 | 49.0 | 3.79e-01 | 97.2% | 89.6% |
| 5035338 | 868.1.1.1 ↗ | a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › CYTH | 0.56 | 38.0 | 3.29e-01 | 100.0% | 44.1% |
| 4646778 | 12.3.1.19 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Gal_mutarotas_2 | 0.55 | 49.0 | 3.70e-01 | 98.2% | 91.7% |
| 3713176 | 5.1.4.223 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RIC1_2nd | 0.55 | 45.0 | 3.22e-01 | 93.6% | 84.7% |
| 3744607 | 298.1.1.6 ↗ | a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › G6PD_C | 0.54 | 43.0 | 3.20e-01 | 86.2% | 72.5% |
| 4661496 | 5.1.4.37 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nup160 | 0.54 | 44.0 | 2.81e-01 | 89.0% | 89.3% |
| 3169437 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.52 | 43.0 | 2.97e-01 | 88.1% | 87.5% |
| 3197766 | 5.1.4.119 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Rav1p_C | 0.52 | 46.0 | 2.74e-01 | 95.4% | 96.6% |
| 222987 | 9.24.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › hypothetical protein BACOVA_00364 › hypothetical protein BACOVA_00364 › DUF4488 | 0.52 | 44.0 | 4.11e-01 | 96.3% | 86.6% |
| 3342304 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.52 | 37.0 | 3.37e-01 | 75.2% | 68.4% |
| 3812932 | 331.3.1.3 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › START | 0.52 | 41.0 | 3.59e-01 | 86.2% | 96.5% |
| 4459482 | 6129.1.1.1 ↗ | beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD | 0.51 | 43.0 | 3.39e-01 | 88.1% | 92.6% |
| 4005479 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.51 | 45.0 | 2.84e-01 | 97.2% | 38.1% |
| 3388794 | 71.2.1.0 ↗ | beta meanders › Lipoprotein localization factors LolAB › PA1994-like › PA1994-like | 0.51 | 43.0 | 3.40e-01 | 94.5% | 97.5% |
| 4258908 | 4998.1.1.1 ↗ | beta sandwiches › Flagellar hook protein flgE D2 domain-like › Flagellar hook protein flgE D2 domain › Flagellar hook protein flgE D2 domain › FlgE_D2 | 0.51 | 42.0 | 3.95e-01 | 94.5% | 87.1% |