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Ig8144_scaffold_2_curated_closed_complete_start-adj_prodigal-single.1__X__X__00387
Bact-VirIg8144_scaffold_2_curated_closed_complete_start-adj_prodigal-single.1__X__X__00387
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-135
Domain cluster:
rep: LacPavin_0818_WC55_scaffold_0-10091_curated_closed_complete_start-adj_prodigal-single.1__X__X__00239__D2-130
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5fgoA00 | 3.10.450.700 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.67 | 27.0 | 3.92e-01 | 78.4% | 80.6% |
| 2ywqA00 | 3.30.160.100 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like | 0.55 | 30.0 | 3.54e-01 | 75.4% | 77.3% |
| 3s98A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 28.0 | 3.61e-01 | 72.4% | 86.6% |
| 1q9uA00 | 3.30.310.70 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TT1751-like domain | 0.52 | 28.0 | 2.91e-01 | 76.1% | 53.9% |
| 7cymA04 | 2.60.40.60 | Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins | 0.50 | 31.0 | 3.63e-01 | 70.1% | 86.6% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4827588 | 2003.1.5.81 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 | 0.74 | 28.0 | 2.63e-01 | 76.1% | 28.1% |
| 3592742 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.63 | 36.0 | 4.23e-01 | 77.6% | 82.2% |
| 3660311 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.58 | 29.0 | 3.59e-01 | 70.9% | 76.2% |
| 3314422 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.55 | 26.0 | 3.37e-01 | 74.6% | 81.4% |
| 4157358 | 330.4.1.1 ↗ | a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC | 0.53 | 25.0 | 3.21e-01 | 78.4% | 75.6% |
| 5034929 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.53 | 34.0 | 2.88e-01 | 100.0% | 40.2% |
| 3830762 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.51 | 29.0 | 3.36e-01 | 79.1% | 75.8% |
| 4183868 | 878.1.1.1 ↗ | a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 › DUF3194 | 0.51 | 28.0 | 3.46e-01 | 91.0% | 87.3% |
| 3323208 | 2004.1.1.198 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 | 0.51 | 34.0 | 3.11e-01 | 100.0% | 47.9% |
| 3281635 | 330.2.1.1 ↗ | a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) › Ribosomal_S30AE | 0.51 | 30.0 | 3.30e-01 | 76.1% | 70.9% |
| 3330850 | 243.3.1.12 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › SQAPI | 0.51 | 33.0 | 3.71e-01 | 76.1% | 87.0% |
D2
medium
residues 140-195
Domain cluster:
rep: Ig8144_scaffold_2_curated_closed_complete_start-adj_prodigal-single.1__X__X__00368__D158-204
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF20216.4 best | DUF6576 | 41.5 | 1.60e-10 | 76.8% | 63.8% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4145351 | 3455.1.1.0 ↗ | alpha arrays › WY-domain in RXLR effectors › WY-domain in RXLR effectors › WY-domain in RXLR effectors | 0.52 | 41.0 | 4.03e-01 | 91.1% | 93.7% |
| 2439584 | 3847.1.1.1 ↗ | alpha bundles › Hemagglutinin HA2 chain › Hemagglutinin HA2 chain › Hemagglutinin HA2 chain › Hemagglutinin | 0.51 | 39.0 | 3.78e-01 | 83.9% | 73.8% |
| 3633621 | 192.5.1.16 ↗ | alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › PF26729 | 0.50 | 37.0 | 3.35e-01 | 80.4% | 65.0% |