←Back to structures
Ig8144_scaffold_2_curated_closed_complete_start-adj_prodigal-single.1__X__X__00536
Bact-VirIg8144_scaffold_2_curated_closed_complete_start-adj_prodigal-single.1__X__X__00536
Identity
- Kingdom:
- phage
Quality
76.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 23-137
Domain cluster:
representative
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2gw6A01 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.68 | 37.0 | 3.78e-01 | 75.7% | 52.6% |
| 3fovA00 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.68 | 41.0 | 4.30e-01 | 79.1% | 66.7% |
| 1qy9A02 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.63 | 41.0 | 3.63e-01 | 82.6% | 46.6% |
| 2fgyA03 | 3.30.1330.140 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Carboxysome Shell Carbonic Anhydrase, C-terminal domain | 0.62 | 37.0 | 3.72e-01 | 83.5% | 57.3% |
| 1bwzA01 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.61 | 34.0 | 3.29e-01 | 83.5% | 48.0% |
| 3l0aA00 | 3.90.320.10 | Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › | 0.61 | 43.0 | 3.29e-01 | 89.6% | 31.6% |
| 2zyzC00 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.58 | 33.0 | 3.61e-01 | 99.1% | 65.6% |
| 6z9uA01 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.58 | 26.0 | 2.94e-01 | 73.9% | 53.0% |
| 1chmA02 | 3.90.230.10 | Alpha Beta › Alpha-Beta Complex › Creatine Amidinohydrolase › Creatinase/methionine aminopeptidase superfamily | 0.57 | 42.0 | 3.35e-01 | 77.4% | 86.6% |
| 3npdA00 | 3.30.300.250 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › | 0.57 | 37.0 | 3.82e-01 | 81.7% | 67.3% |
| 4km3B00 | 3.90.230.10 | Alpha Beta › Alpha-Beta Complex › Creatine Amidinohydrolase › Creatinase/methionine aminopeptidase superfamily | 0.55 | 41.0 | 3.15e-01 | 78.3% | 67.9% |
| 1a79A01 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.53 | 32.0 | 3.40e-01 | 94.8% | 67.0% |
| 2zsgA02 | 3.90.230.10 | Alpha Beta › Alpha-Beta Complex › Creatine Amidinohydrolase › Creatinase/methionine aminopeptidase superfamily | 0.53 | 38.0 | 3.05e-01 | 74.8% | 85.5% |
| 1xubA02 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.53 | 35.0 | 3.28e-01 | 86.1% | 53.4% |
| 5jqkA03 | 3.90.230.10 | Alpha Beta › Alpha-Beta Complex › Creatine Amidinohydrolase › Creatinase/methionine aminopeptidase superfamily | 0.52 | 38.0 | 2.90e-01 | 75.7% | 70.0% |
| 2jbrA02 | 2.40.110.10 | Mainly Beta › Beta Barrel › Butyryl-CoA Dehydrogenase, subunit A; domain 2 › Butyryl-CoA Dehydrogenase, subunit A, domain 2 | 0.52 | 38.0 | 4.18e-01 | 87.0% | 93.7% |
| 1wn1A02 | 3.90.230.10 | Alpha Beta › Alpha-Beta Complex › Creatine Amidinohydrolase › Creatinase/methionine aminopeptidase superfamily | 0.52 | 38.0 | 3.10e-01 | 76.5% | 88.1% |
ECOD (20)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4965204 | 7523.1.1.0 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II | 0.62 | 31.0 | 3.14e-01 | 88.7% | 45.0% |
| 4397425 | 2008.1.1.6 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UPF0102 | 0.61 | 40.0 | 4.14e-01 | 75.7% | 69.7% |
| 5064069 | 2008.2.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like | 0.61 | 30.0 | 3.49e-01 | 93.9% | 63.7% |
| 5052071 | 7528.1.1.0 ↗ | a/b three-layered sandwiches › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains | 0.58 | 45.0 | 3.96e-01 | 81.7% | 71.2% |
| 119502 | 3148.1.1.1 ↗ | a+b two layers › putative secreted protein PA3611 › putative secreted protein PA3611 › putative secreted protein PA3611 › QSregVF | 0.57 | 37.0 | 3.83e-01 | 81.7% | 67.9% |
| 4223379 | 2008.1.1.6 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UPF0102 | 0.57 | 37.0 | 3.80e-01 | 83.5% | 66.1% |
| 4035993 | 2008.1.1.172 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PF26318 | 0.57 | 37.0 | 3.02e-01 | 82.6% | 34.9% |
| 5045718 | 286.1.1.2 ↗ | a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF | 0.57 | 39.0 | 3.47e-01 | 85.2% | 47.9% |
| 3784988 | 1.1.9.33 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_NSUN2 | 0.56 | 38.0 | 4.13e-01 | 87.0% | 83.2% |
| 3614493 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.56 | 48.0 | 3.61e-01 | 94.8% | 42.9% |
| 4141864 | 2008.1.1.6 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UPF0102 | 0.56 | 37.0 | 3.74e-01 | 84.3% | 65.5% |
| 3389626 | 4292.2.1.0 ↗ | a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain | 0.56 | 24.0 | 2.94e-01 | 86.1% | 58.7% |
| 3573883 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.55 | 42.0 | 4.11e-01 | 87.0% | 74.4% |
| 2756766 | 2008.2.1.2 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › Sen15 | 0.54 | 34.0 | 3.28e-01 | 92.2% | 53.7% |
| 3312553 | 222.1.1.5 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › FabA | 0.54 | 38.0 | 3.82e-01 | 86.1% | 70.8% |
| 3279726 | 2008.6.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Acetyl-CoA carboxylase AC4 and AC5 domains › Acetyl-CoA carboxylase AC4 and AC5 domains | 0.54 | 42.0 | 3.55e-01 | 87.0% | 50.5% |
| 4171461 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.52 | 42.0 | 3.60e-01 | 86.1% | 85.9% |
| 3588927 | 283.1.1.1 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase › Peptidase_M24 | 0.52 | 38.0 | 3.07e-01 | 77.4% | 86.4% |
| 4378403 | 210.1.2.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › Penicil_amidase | 0.52 | 45.0 | 2.71e-01 | 93.9% | 53.0% |
| 5044383 | 2003.1.5.66 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 | 0.51 | 42.0 | 3.64e-01 | 90.4% | 87.0% |